miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 5' -58.9 NC_003085.1 + 5318 0.66 0.551593
Target:  5'- cGCGaGCgCGUgGCCacgCUGGAGGCGa -3'
miRNA:   3'- -CGCaCGgGCAgUGGca-GGCCUUCGCg -5'
11462 5' -58.9 NC_003085.1 + 8112 0.66 0.548463
Target:  5'- cGCG-GCCCGgccUGCCGUagaaggccaaguccCCGGGcuucGGCGUg -3'
miRNA:   3'- -CGCaCGGGCa--GUGGCA--------------GGCCU----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 27024 0.66 0.547421
Target:  5'- gGUGUGCCUGcgCGCuCGacgcugccauucgCCGGuAGCGCc -3'
miRNA:   3'- -CGCACGGGCa-GUG-GCa------------GGCCuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 674 0.66 0.541181
Target:  5'- aCGUcGCCgGcCACCugucccgcGUCCGGccucGGGCGCg -3'
miRNA:   3'- cGCA-CGGgCaGUGG--------CAGGCC----UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 25876 0.66 0.541181
Target:  5'- aGCaa-CUCGcCGCCGUgCCGGAcGCGCu -3'
miRNA:   3'- -CGcacGGGCaGUGGCA-GGCCUuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 48565 0.66 0.539106
Target:  5'- aGCGgguuggcacgggaUGCCCcucggacGcCACCG-CCGGGaaGGCGCg -3'
miRNA:   3'- -CGC-------------ACGGG-------CaGUGGCaGGCCU--UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 34569 0.66 0.53807
Target:  5'- cGCGUGCgCCG-CACagccagguugaaggUGUCCGGcAGCa- -3'
miRNA:   3'- -CGCACG-GGCaGUG--------------GCAGGCCuUCGcg -5'
11462 5' -58.9 NC_003085.1 + 38061 0.66 0.530836
Target:  5'- cGCGgcgGUgCGUCAgCCGg-CGGuAGCGCu -3'
miRNA:   3'- -CGCa--CGgGCAGU-GGCagGCCuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 14483 0.66 0.530836
Target:  5'- aGCGUGCgCacgagGUCAUCGgcuucCUGuGAGGCGCc -3'
miRNA:   3'- -CGCACG-Gg----CAGUGGCa----GGC-CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 44803 0.66 0.530836
Target:  5'- cGUGaaagGCUCGccUCugCcaCCGGggGCGCg -3'
miRNA:   3'- -CGCa---CGGGC--AGugGcaGGCCuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 2750 0.66 0.530836
Target:  5'- gGCGcUGCCCaaggacucCGCUGgCCGGAAGCagGCa -3'
miRNA:   3'- -CGC-ACGGGca------GUGGCaGGCCUUCG--CG- -5'
11462 5' -58.9 NC_003085.1 + 5310 0.66 0.530836
Target:  5'- gGCGcGCgCCGUCcugaaGgCGaCCGaGAAGCGCg -3'
miRNA:   3'- -CGCaCG-GGCAG-----UgGCaGGC-CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 10735 0.66 0.530836
Target:  5'- aGCGgacgCUGUUGCUGUCCGGccacacGGGCGCc -3'
miRNA:   3'- -CGCacg-GGCAGUGGCAGGCC------UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 2147 0.66 0.520563
Target:  5'- gGCG-GCCCccgccUCAugacguCCGUgCUGGAAGUGCg -3'
miRNA:   3'- -CGCaCGGGc----AGU------GGCA-GGCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1795 0.66 0.520563
Target:  5'- gGUG-GCCCGUUgGCUGgCCGGGacuGGUGCg -3'
miRNA:   3'- -CGCaCGGGCAG-UGGCaGGCCU---UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 27777 0.66 0.520563
Target:  5'- aGCGgGCCa--CcUCGUCCuGGAGGCGCu -3'
miRNA:   3'- -CGCaCGGgcaGuGGCAGG-CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 17855 0.66 0.51954
Target:  5'- -gGUGCCCGcaggCGCCGUUUgcagggaGGGAGUGa -3'
miRNA:   3'- cgCACGGGCa---GUGGCAGG-------CCUUCGCg -5'
11462 5' -58.9 NC_003085.1 + 1029 0.66 0.51954
Target:  5'- cGCG-GCC--UCGCCGUCCaugcggaGGAAGCcaGCg -3'
miRNA:   3'- -CGCaCGGgcAGUGGCAGG-------CCUUCG--CG- -5'
11462 5' -58.9 NC_003085.1 + 17736 0.66 0.510369
Target:  5'- cGCGUGaCCaGUC-CCGccUUCGGGagauGGCGCg -3'
miRNA:   3'- -CGCAC-GGgCAGuGGC--AGGCCU----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 13578 0.66 0.510369
Target:  5'- cGCGUGgaCGUgGgCa-CCGGAGGCGCg -3'
miRNA:   3'- -CGCACggGCAgUgGcaGGCCUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.