miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 44237 0.72 0.201165
Target:  5'- aGGCCGcuuCCugCCGGGccgcgucgcgcucgGACuCGGCCuGCCu -3'
miRNA:   3'- -CCGGCu--GGugGGUCU--------------UUG-GCCGG-CGG- -5'
11463 5' -60 NC_003085.1 + 43066 0.74 0.143717
Target:  5'- cGGCUGcguggagacACgGCCgAGGaagaaacGACCGGCCGCCa -3'
miRNA:   3'- -CCGGC---------UGgUGGgUCU-------UUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 42532 0.73 0.160267
Target:  5'- cGCCcaGCCGCCCGGGAugCGGUgGaCCa -3'
miRNA:   3'- cCGGc-UGGUGGGUCUUugGCCGgC-GG- -5'
11463 5' -60 NC_003085.1 + 41762 0.67 0.435156
Target:  5'- cGcCCGGCCAgCCUGGAAgcccaGCCGGUacccuuCGCCc -3'
miRNA:   3'- cC-GGCUGGU-GGGUCUU-----UGGCCG------GCGG- -5'
11463 5' -60 NC_003085.1 + 41506 0.66 0.493055
Target:  5'- cGGcCCGACUucaUCGGcuACCGGgCGCUa -3'
miRNA:   3'- -CC-GGCUGGug-GGUCuuUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 41474 0.68 0.381386
Target:  5'- cGUCGGauucCCAUCCAGAuggcgGACCuGCUGCCc -3'
miRNA:   3'- cCGGCU----GGUGGGUCU-----UUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 41403 0.69 0.324509
Target:  5'- cGGCCGugUugUCGGAGccucgGgCGGCaacaGCCa -3'
miRNA:   3'- -CCGGCugGugGGUCUU-----UgGCCGg---CGG- -5'
11463 5' -60 NC_003085.1 + 41330 0.69 0.294952
Target:  5'- cGCCGAa-GCCCGGGGACUuGGCCuucuacggcagGCCg -3'
miRNA:   3'- cCGGCUggUGGGUCUUUGG-CCGG-----------CGG- -5'
11463 5' -60 NC_003085.1 + 41102 0.69 0.332235
Target:  5'- uGGCucCGGCCACCCuuucuuCCaGCCGCUc -3'
miRNA:   3'- -CCG--GCUGGUGGGucuuu-GGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 41041 0.66 0.493055
Target:  5'- uGGCCGAgCACCU-GAAACU-GCCaGCg -3'
miRNA:   3'- -CCGGCUgGUGGGuCUUUGGcCGG-CGg -5'
11463 5' -60 NC_003085.1 + 40825 0.7 0.287898
Target:  5'- cGGCCGGCCuguACCUgacGGcgGCCGGgCUgGCCa -3'
miRNA:   3'- -CCGGCUGG---UGGG---UCuuUGGCC-GG-CGG- -5'
11463 5' -60 NC_003085.1 + 40627 0.7 0.267534
Target:  5'- cGGCCGcuGCCguccucgucGCCCuGAcGCUGGCUGCg -3'
miRNA:   3'- -CCGGC--UGG---------UGGGuCUuUGGCCGGCGg -5'
11463 5' -60 NC_003085.1 + 40402 0.72 0.197564
Target:  5'- gGGCCGaACCACCac---ACCuGCCGCCc -3'
miRNA:   3'- -CCGGC-UGGUGGgucuuUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 40400 0.72 0.205879
Target:  5'- uGGCCGgcauccaacuccucACCACCUucGGAGgcgcgcuGCCuGCCGCCg -3'
miRNA:   3'- -CCGGC--------------UGGUGGG--UCUU-------UGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 40290 0.7 0.287898
Target:  5'- cGCCGACCcacagACUCAGGAcuGCgCGGCgGCg -3'
miRNA:   3'- cCGGCUGG-----UGGGUCUU--UG-GCCGgCGg -5'
11463 5' -60 NC_003085.1 + 39927 0.72 0.191025
Target:  5'- cGGCCGcgucgugcACUACCaGGGAGCCGaugacccgccgcgcGCCGCCa -3'
miRNA:   3'- -CCGGC--------UGGUGGgUCUUUGGC--------------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 39480 0.71 0.21836
Target:  5'- uGCCGACgugcgcgucgaggCGCUCgAGAAGCCGGUgCGCCu -3'
miRNA:   3'- cCGGCUG-------------GUGGG-UCUUUGGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 39480 0.66 0.454031
Target:  5'- cGGCguaGGCCGuCagCGGAAGCUGGcCCGCUu -3'
miRNA:   3'- -CCGg--CUGGU-Gg-GUCUUUGGCC-GGCGG- -5'
11463 5' -60 NC_003085.1 + 39295 0.66 0.463633
Target:  5'- aGCCGGguCCGCCCGGuccuCgCGGuacuccCCGCCg -3'
miRNA:   3'- cCGGCU--GGUGGGUCuuu-G-GCC------GGCGG- -5'
11463 5' -60 NC_003085.1 + 38994 0.68 0.381386
Target:  5'- aGGUCGGCCAgCCgAGggGCgccaaaGcGCCGCg -3'
miRNA:   3'- -CCGGCUGGU-GGgUCuuUGg-----C-CGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.