miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 20332 0.66 0.454031
Target:  5'- aGGCgGACUcaaucGCCUGGuuccgcGCCGcGUCGCCg -3'
miRNA:   3'- -CCGgCUGG-----UGGGUCuu----UGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 47831 0.66 0.454031
Target:  5'- aGGCCauGACUACgCCuccucuGugUGGCUGCCg -3'
miRNA:   3'- -CCGG--CUGGUG-GGucu---UugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 31115 0.66 0.473341
Target:  5'- cGGCCuGcACCGCCCcguaAGGcAGCgcguugCGGCUGCCc -3'
miRNA:   3'- -CCGG-C-UGGUGGG----UCU-UUG------GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 29775 0.66 0.493055
Target:  5'- cGCCGcgcGCC-UCCAGGGccGCCaggaGGUCGCCg -3'
miRNA:   3'- cCGGC---UGGuGGGUCUU--UGG----CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 5208 0.67 0.405033
Target:  5'- aGGCCGaguccgagcgcgacGCgGCCCggcAGGAAgCGGCCuCCa -3'
miRNA:   3'- -CCGGC--------------UGgUGGG---UCUUUgGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 25680 0.67 0.434224
Target:  5'- cGGCCGGacgaauUCGCCCAu--GCCgcuucgaGGCUGCCu -3'
miRNA:   3'- -CCGGCU------GGUGGGUcuuUGG-------CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 39480 0.66 0.454031
Target:  5'- cGGCguaGGCCGuCagCGGAAGCUGGcCCGCUu -3'
miRNA:   3'- -CCGg--CUGGU-Gg-GUCUUUGGCC-GGCGG- -5'
11463 5' -60 NC_003085.1 + 13558 0.66 0.493055
Target:  5'- cGGCUGGCCguggcaugGCCCuGGGACuCcGCgGCCc -3'
miRNA:   3'- -CCGGCUGG--------UGGGuCUUUG-GcCGgCGG- -5'
11463 5' -60 NC_003085.1 + 27508 0.67 0.435156
Target:  5'- aGCCaacggaGCCACCCccugcauGAAGCUGGCgaUGCCg -3'
miRNA:   3'- cCGGc-----UGGUGGGu------CUUUGGCCG--GCGG- -5'
11463 5' -60 NC_003085.1 + 41041 0.66 0.493055
Target:  5'- uGGCCGAgCACCU-GAAACU-GCCaGCg -3'
miRNA:   3'- -CCGGCUgGUGGGuCUUUGGcCGG-CGg -5'
11463 5' -60 NC_003085.1 + 36897 0.66 0.454031
Target:  5'- cGGUCcACCGuCCCAGc--CCGGCCaGCg -3'
miRNA:   3'- -CCGGcUGGU-GGGUCuuuGGCCGG-CGg -5'
11463 5' -60 NC_003085.1 + 1194 0.66 0.451171
Target:  5'- gGGgCGACCAuugaccaaccucacCCCGGc-GCCGcGCUGCUg -3'
miRNA:   3'- -CCgGCUGGU--------------GGGUCuuUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 15433 0.66 0.463633
Target:  5'- uGCCGucACCAUCCGGAacgaGAgCGGCCa-- -3'
miRNA:   3'- cCGGC--UGGUGGGUCU----UUgGCCGGcgg -5'
11463 5' -60 NC_003085.1 + 47460 0.66 0.472365
Target:  5'- cGCCGcauCCGCUCGGuagaaguGGACgGGCUGCUc -3'
miRNA:   3'- cCGGCu--GGUGGGUC-------UUUGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 20051 0.66 0.483149
Target:  5'- aGCCu-CCGCCau-GGGCUGGCCGCg -3'
miRNA:   3'- cCGGcuGGUGGgucUUUGGCCGGCGg -5'
11463 5' -60 NC_003085.1 + 37162 0.66 0.483149
Target:  5'- cGCCG-CaACCCAGcggaccACCGcGCCGUCg -3'
miRNA:   3'- cCGGCuGgUGGGUCuu----UGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 19191 0.67 0.398814
Target:  5'- cGGCauucaCGuCCGCCUggggcggcGGggGCUGGgCGCCg -3'
miRNA:   3'- -CCG-----GCuGGUGGG--------UCuuUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 47951 0.67 0.398814
Target:  5'- cGCCuGGCgGCCguGAGgcgcACCGGCCGa- -3'
miRNA:   3'- cCGG-CUGgUGGguCUU----UGGCCGGCgg -5'
11463 5' -60 NC_003085.1 + 28363 0.67 0.416743
Target:  5'- -uCCGcCCuguCCCAGGgguggcagGACUGGCCGUCc -3'
miRNA:   3'- ccGGCuGGu--GGGUCU--------UUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 48345 0.67 0.42589
Target:  5'- cGGCCGAUggaCAUCgGGAcgGGCUcGCUGCCg -3'
miRNA:   3'- -CCGGCUG---GUGGgUCU--UUGGcCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.