miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 24377 0.66 0.493615
Target:  5'- gGCCgGgCCAUCaaugGCCU-GGACGGgGCc -3'
miRNA:   3'- aCGGaCgGGUAG----UGGAgCCUGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 2836 0.66 0.493615
Target:  5'- cGUCUGCCCggCAgC-CGGGCGaGgaggGCu -3'
miRNA:   3'- aCGGACGGGuaGUgGaGCCUGC-Ca---CG- -5'
11479 3' -59.1 NC_003085.1 + 686 0.66 0.493615
Target:  5'- -aCCUGUCCcgcGUCcgGCCUCGGGCGcG-GCc -3'
miRNA:   3'- acGGACGGG---UAG--UGGAGCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 25826 0.66 0.483519
Target:  5'- gGCCUGCUCGcgcugcugaagCACCuUCGaGACuuccgGGUGCa -3'
miRNA:   3'- aCGGACGGGUa----------GUGG-AGC-CUG-----CCACG- -5'
11479 3' -59.1 NC_003085.1 + 3844 0.66 0.482515
Target:  5'- cGCaCUGCCCAUCcaggACCaCGGcgcgucgACGGcGCg -3'
miRNA:   3'- aCG-GACGGGUAG----UGGaGCC-------UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 32539 0.66 0.473523
Target:  5'- gGCCuUGCCCu---CCaCGGGCGGggGCu -3'
miRNA:   3'- aCGG-ACGGGuaguGGaGCCUGCCa-CG- -5'
11479 3' -59.1 NC_003085.1 + 20132 0.66 0.473523
Target:  5'- gGCCUGCCCcg-----CGG-CGGUGCc -3'
miRNA:   3'- aCGGACGGGuaguggaGCCuGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 47954 0.66 0.473523
Target:  5'- cUGCCUcuuGCCCGagCGCC--GGACGGgccGCg -3'
miRNA:   3'- -ACGGA---CGGGUa-GUGGagCCUGCCa--CG- -5'
11479 3' -59.1 NC_003085.1 + 16672 0.66 0.473523
Target:  5'- gGCgCUGCCUGUCgACCUgcuacacgcaGGGCGGggGCu -3'
miRNA:   3'- aCG-GACGGGUAG-UGGAg---------CCUGCCa-CG- -5'
11479 3' -59.1 NC_003085.1 + 27943 0.66 0.473523
Target:  5'- gGaCUUGCCCAUCuaCUCGuccGCGGUGUg -3'
miRNA:   3'- aC-GGACGGGUAGugGAGCc--UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 28411 0.66 0.473523
Target:  5'- gGCUUGCCCA-C-CUUCGGgACGGaagcccagagauUGCg -3'
miRNA:   3'- aCGGACGGGUaGuGGAGCC-UGCC------------ACG- -5'
11479 3' -59.1 NC_003085.1 + 46200 0.66 0.463632
Target:  5'- gGCUccaUGCCCGcUCAUggCGGGCGaGUGUg -3'
miRNA:   3'- aCGG---ACGGGU-AGUGgaGCCUGC-CACG- -5'
11479 3' -59.1 NC_003085.1 + 43805 0.66 0.463632
Target:  5'- aGCgUGUCCGUCAUCUUGucguagcCGGUGUu -3'
miRNA:   3'- aCGgACGGGUAGUGGAGCcu-----GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 25023 0.66 0.463632
Target:  5'- cGCCgcuggGCaCCAUCACCcgcgcgaaGGAccCGGUGUu -3'
miRNA:   3'- aCGGa----CG-GGUAGUGGag------CCU--GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 25162 0.66 0.453851
Target:  5'- gGCCgGCgaCCGUgGCCUgGuGGCGGUGg -3'
miRNA:   3'- aCGGaCG--GGUAgUGGAgC-CUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 44087 0.66 0.452879
Target:  5'- cGCC-GUCCAUCGCCgCGGccagccgACGGaaUGCc -3'
miRNA:   3'- aCGGaCGGGUAGUGGaGCC-------UGCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 12770 0.67 0.434631
Target:  5'- gGCCuggggugaUGCCCcugcCGCCguugUCGGGCaGGUGCu -3'
miRNA:   3'- aCGG--------ACGGGua--GUGG----AGCCUG-CCACG- -5'
11479 3' -59.1 NC_003085.1 + 2253 0.67 0.425199
Target:  5'- aUGCCUGCCCAcCgggggGCCUCGucGCGGa-- -3'
miRNA:   3'- -ACGGACGGGUaG-----UGGAGCc-UGCCacg -5'
11479 3' -59.1 NC_003085.1 + 16900 0.67 0.41589
Target:  5'- cGCCUccgccaacucGCUCAugUCGCUgagcuuguUCGcGACGGUGCg -3'
miRNA:   3'- aCGGA----------CGGGU--AGUGG--------AGC-CUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 8658 0.67 0.406708
Target:  5'- gGCCgggacGCgCGUgGCCUUGGGCgccggGGUGCc -3'
miRNA:   3'- aCGGa----CGgGUAgUGGAGCCUG-----CCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.