miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 3' -60.2 NC_003085.1 + 16696 0.66 0.448245
Target:  5'- cGCAggGCGG-GGgCUUGGgGCUugCGAc -3'
miRNA:   3'- -CGUa-CGCCaCCgGGACUgCGGugGCU- -5'
11482 3' -60.2 NC_003085.1 + 12663 0.66 0.447289
Target:  5'- aGCGUGCGGgacgaagugUGcGCCUgccuccggguggaUGACGCCACg-- -3'
miRNA:   3'- -CGUACGCC---------AC-CGGG-------------ACUGCGGUGgcu -5'
11482 3' -60.2 NC_003085.1 + 24571 0.66 0.447289
Target:  5'- gGCgAUGaGGcGGCCCUGgaacuggGCGCCGCUGc -3'
miRNA:   3'- -CG-UACgCCaCCGGGAC-------UGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 20141 0.66 0.446333
Target:  5'- cGCG-GCGGU-GCCCUGuccaauaGCGCUggccaugGCCGAg -3'
miRNA:   3'- -CGUaCGCCAcCGGGAC-------UGCGG-------UGGCU- -5'
11482 3' -60.2 NC_003085.1 + 30376 0.66 0.444426
Target:  5'- cGgGUGCGGcgcacuccguccgGGCCC-GGCGCCugCu- -3'
miRNA:   3'- -CgUACGCCa------------CCGGGaCUGCGGugGcu -5'
11482 3' -60.2 NC_003085.1 + 9640 0.66 0.438729
Target:  5'- gGCGgagucUGGUGGCCCUgugaagauuggGACGgCCGCCa- -3'
miRNA:   3'- -CGUac---GCCACCGGGA-----------CUGC-GGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 31779 0.66 0.438729
Target:  5'- aGCGUGCGGUugggcgaagcGGCCCggccgcuCGCgACgGAc -3'
miRNA:   3'- -CGUACGCCA----------CCGGGacu----GCGgUGgCU- -5'
11482 3' -60.2 NC_003085.1 + 24405 0.66 0.438729
Target:  5'- cCGUGcCGGUGGaCCCgacgGugGgCACCu- -3'
miRNA:   3'- cGUAC-GCCACC-GGGa---CugCgGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 48573 0.66 0.42933
Target:  5'- gGCA--CGGgauGCCCcucgGACGCCACCGc -3'
miRNA:   3'- -CGUacGCCac-CGGGa---CUGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 2896 0.66 0.411803
Target:  5'- cGUAUGuCGGgaaggaccucuacggGGCCCcagucugGAUGCCGCUGGu -3'
miRNA:   3'- -CGUAC-GCCa--------------CCGGGa------CUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 19439 0.66 0.410893
Target:  5'- gGCGUGUGGaUGGacaccaaCCcGugGCaCACCGGc -3'
miRNA:   3'- -CGUACGCC-ACCg------GGaCugCG-GUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 25183 0.66 0.409984
Target:  5'- ---gGCGGUGGCgaUGAgcgccaaCGUCGCCGAg -3'
miRNA:   3'- cguaCGCCACCGggACU-------GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 42457 0.66 0.401861
Target:  5'- ---aGCGGUccgugucgaGGCCCgUGGCGUCAucuCCGAg -3'
miRNA:   3'- cguaCGCCA---------CCGGG-ACUGCGGU---GGCU- -5'
11482 3' -60.2 NC_003085.1 + 22488 0.66 0.401861
Target:  5'- gGCA--CGGUGGCgaCgGACGgCACCGAc -3'
miRNA:   3'- -CGUacGCCACCGg-GaCUGCgGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 29263 0.66 0.401861
Target:  5'- cGCGUcGUGGcUGGCCCaGuCGUgCACCGGc -3'
miRNA:   3'- -CGUA-CGCC-ACCGGGaCuGCG-GUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 4020 0.67 0.384179
Target:  5'- gGCAgaguUGGUGGUgCCgugacGACGCCACCGc -3'
miRNA:   3'- -CGUac--GCCACCG-GGa----CUGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 8666 0.67 0.375535
Target:  5'- ---cGCGcGUGGCCUUgGGCGCCgggguGCCGu -3'
miRNA:   3'- cguaCGC-CACCGGGA-CUGCGG-----UGGCu -5'
11482 3' -60.2 NC_003085.1 + 8153 0.67 0.375535
Target:  5'- gGCGUGuCGGUGGgCgUGAgGUCGUCGAa -3'
miRNA:   3'- -CGUAC-GCCACCgGgACUgCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 5244 0.67 0.375534
Target:  5'- -gAUGUGGUGGUUC-GACGCUGCgGGc -3'
miRNA:   3'- cgUACGCCACCGGGaCUGCGGUGgCU- -5'
11482 3' -60.2 NC_003085.1 + 36958 0.67 0.375534
Target:  5'- gGCAgggccGCGG-GGCCauguUGGCGCCGCuuCGAc -3'
miRNA:   3'- -CGUa----CGCCaCCGGg---ACUGCGGUG--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.