miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11483 5' -56.1 NC_003085.1 + 26611 0.66 0.614149
Target:  5'- ---gGGCgcuGCCGGAcUCUCCuucgcUGCCg -3'
miRNA:   3'- aaaaCCGac-CGGCCUuAGGGGu----ACGG- -5'
11483 5' -56.1 NC_003085.1 + 15188 0.66 0.591796
Target:  5'- ---cGGCUGaGCCGGug-CgCCAgcGCCg -3'
miRNA:   3'- aaaaCCGAC-CGGCCuuaGgGGUa-CGG- -5'
11483 5' -56.1 NC_003085.1 + 38717 0.66 0.590681
Target:  5'- ---cGGCgcccgugUGGCCGGAcagcaacagcGUCCgCuUGCCg -3'
miRNA:   3'- aaaaCCG-------ACCGGCCU----------UAGGgGuACGG- -5'
11483 5' -56.1 NC_003085.1 + 795 0.66 0.580667
Target:  5'- --gUGGCcccaGGCCacgguGGAcGUCCgCGUGCCg -3'
miRNA:   3'- aaaACCGa---CCGG-----CCU-UAGGgGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 43782 0.66 0.580667
Target:  5'- ---gGGUcagcaucccgaaUGGCCGGAAUCUCUccGCg -3'
miRNA:   3'- aaaaCCG------------ACCGGCCUUAGGGGuaCGg -5'
11483 5' -56.1 NC_003085.1 + 40996 0.66 0.580667
Target:  5'- ---gGGCUGGCCcagcGGcGUCgUCAUcGCCg -3'
miRNA:   3'- aaaaCCGACCGG----CCuUAGgGGUA-CGG- -5'
11483 5' -56.1 NC_003085.1 + 20621 0.67 0.558552
Target:  5'- ---gGGC-GGCgCGGGugcuugcuUCCCCAUGgCCu -3'
miRNA:   3'- aaaaCCGaCCG-GCCUu-------AGGGGUAC-GG- -5'
11483 5' -56.1 NC_003085.1 + 41149 0.67 0.547582
Target:  5'- ----uGCUGGCCGGAugcCUCCAacgGCUa -3'
miRNA:   3'- aaaacCGACCGGCCUua-GGGGUa--CGG- -5'
11483 5' -56.1 NC_003085.1 + 24370 0.67 0.547582
Target:  5'- cUUUGGC-GGCCGGGccaucaauggCCuggacggggCCGUGCCg -3'
miRNA:   3'- aAAACCGaCCGGCCUua--------GG---------GGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 38949 0.67 0.536681
Target:  5'- --cUGGC-GGCUGGGucGUCCUCAacggaGCCa -3'
miRNA:   3'- aaaACCGaCCGGCCU--UAGGGGUa----CGG- -5'
11483 5' -56.1 NC_003085.1 + 573 0.67 0.536681
Target:  5'- ---cGGCUGGCgGGccaaugCUCCGUGUg -3'
miRNA:   3'- aaaaCCGACCGgCCuua---GGGGUACGg -5'
11483 5' -56.1 NC_003085.1 + 7291 0.67 0.525857
Target:  5'- ---aGGCUGGCUgcgacgGGAGagUCCAUGUCc -3'
miRNA:   3'- aaaaCCGACCGG------CCUUagGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 19370 0.67 0.519401
Target:  5'- ---aGGC-GGCCGGcguccuucugagccaGcaaGUCCuCCAUGCCg -3'
miRNA:   3'- aaaaCCGaCCGGCC---------------U---UAGG-GGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 6376 0.68 0.493908
Target:  5'- --cUGGC-GGCCGGucguuucUUCCUcgGCCg -3'
miRNA:   3'- aaaACCGaCCGGCCuu-----AGGGGuaCGG- -5'
11483 5' -56.1 NC_003085.1 + 41358 0.68 0.462877
Target:  5'- ---cGGCaGGCCGGGccgcGUCaCCCAcGUCa -3'
miRNA:   3'- aaaaCCGaCCGGCCU----UAG-GGGUaCGG- -5'
11483 5' -56.1 NC_003085.1 + 26284 0.68 0.462877
Target:  5'- --cUGGCccucGGCCuGAaucAUCCCCAUGUa -3'
miRNA:   3'- aaaACCGa---CCGGcCU---UAGGGGUACGg -5'
11483 5' -56.1 NC_003085.1 + 25666 0.68 0.452762
Target:  5'- ---cGGaCUgcgacuaccGGCCGGAcgaauUCgCCCAUGCCg -3'
miRNA:   3'- aaaaCC-GA---------CCGGCCUu----AG-GGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 19513 0.68 0.442768
Target:  5'- ---gGGCU-GCUGGAGggCCUGUGCCa -3'
miRNA:   3'- aaaaCCGAcCGGCCUUagGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 20110 0.7 0.385559
Target:  5'- --gUGGCggGGCUGGAGUCCg---GCCu -3'
miRNA:   3'- aaaACCGa-CCGGCCUUAGGgguaCGG- -5'
11483 5' -56.1 NC_003085.1 + 23213 0.7 0.358846
Target:  5'- ---aGGCagUGGCCGGGcugCUCCAgacgGCCg -3'
miRNA:   3'- aaaaCCG--ACCGGCCUua-GGGGUa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.