miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11489 5' -55.6 NC_003085.1 + 3733 0.66 0.663171
Target:  5'- cAGGCAGCAcCCGcgcaGGACUuggugagcgGCGUCUAcGCa -3'
miRNA:   3'- -UCUGUCGUuGGC----CCUGA---------CGCAGGU-UG- -5'
11489 5' -55.6 NC_003085.1 + 351 0.66 0.663171
Target:  5'- aGGGCGGCAa--GGGAUgaGCG-CCGACa -3'
miRNA:   3'- -UCUGUCGUuggCCCUGa-CGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 30341 0.66 0.663171
Target:  5'- cGGAC-GCuguCgCGGGGCgcacugcgGCGUCUAGCa -3'
miRNA:   3'- -UCUGuCGuu-G-GCCCUGa-------CGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 48512 0.66 0.660949
Target:  5'- cGGCAGCGGCCugucuggcacccGGAC-GCGgCCGACg -3'
miRNA:   3'- uCUGUCGUUGGc-----------CCUGaCGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 963 0.66 0.647597
Target:  5'- cAGGCcGCuGCCGGGGCaggacacgccgccGUGUCCAAg -3'
miRNA:   3'- -UCUGuCGuUGGCCCUGa------------CGCAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 48130 0.66 0.640911
Target:  5'- cGcCAGCAGuCUGGG-CUGCcuccUCCAGCg -3'
miRNA:   3'- uCuGUCGUU-GGCCCuGACGc---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 22036 0.66 0.640911
Target:  5'- aGGGCuGCGcuguACCGGcGAUUGCGcCCGcggGCa -3'
miRNA:   3'- -UCUGuCGU----UGGCC-CUGACGCaGGU---UG- -5'
11489 5' -55.6 NC_003085.1 + 27482 0.66 0.618619
Target:  5'- aAGGgAGCGcuGCCGGGcacCUGCugagCCAACg -3'
miRNA:   3'- -UCUgUCGU--UGGCCCu--GACGca--GGUUG- -5'
11489 5' -55.6 NC_003085.1 + 19327 0.66 0.616391
Target:  5'- cGugGGCuGCUGGGGCcggcggcggaugGCGUCCGu- -3'
miRNA:   3'- uCugUCGuUGGCCCUGa-----------CGCAGGUug -5'
11489 5' -55.6 NC_003085.1 + 9459 0.67 0.596374
Target:  5'- uGGACgAGCucgaGGCCGGGcaAUU-CGUCCAGCg -3'
miRNA:   3'- -UCUG-UCG----UUGGCCC--UGAcGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 34511 0.67 0.596374
Target:  5'- cGGAC-GCGugCGGcGACaGCGUCagCAACa -3'
miRNA:   3'- -UCUGuCGUugGCC-CUGaCGCAG--GUUG- -5'
11489 5' -55.6 NC_003085.1 + 28021 0.67 0.585294
Target:  5'- cGACGGCua-CGuGGACgGCGUCCu-- -3'
miRNA:   3'- uCUGUCGuugGC-CCUGaCGCAGGuug -5'
11489 5' -55.6 NC_003085.1 + 21027 0.67 0.574254
Target:  5'- cGGACGGCAGCCGcaaucucuGGGCUucCGUCCc-- -3'
miRNA:   3'- -UCUGUCGUUGGC--------CCUGAc-GCAGGuug -5'
11489 5' -55.6 NC_003085.1 + 30473 0.67 0.563263
Target:  5'- uAGGCGGCGACCuGGAC-GCGacgCCugGACu -3'
miRNA:   3'- -UCUGUCGUUGGcCCUGaCGCa--GG--UUG- -5'
11489 5' -55.6 NC_003085.1 + 35229 0.68 0.530661
Target:  5'- gGGGCuGUAACCGGGcccCUGCuUCCGcuuGCg -3'
miRNA:   3'- -UCUGuCGUUGGCCCu--GACGcAGGU---UG- -5'
11489 5' -55.6 NC_003085.1 + 11606 0.68 0.519944
Target:  5'- aGGGCGGCGcgaaggggcuguGCaGGGGCUGCuaCCAGCg -3'
miRNA:   3'- -UCUGUCGU------------UGgCCCUGACGcaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10727 0.68 0.519944
Target:  5'- uGACGGCAAgCGGacGCUGUugcuGUCCGGCc -3'
miRNA:   3'- uCUGUCGUUgGCCc-UGACG----CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 29478 0.68 0.509312
Target:  5'- cGGCGGCAgggccguacuugGCCaGGaACUGC-UCCAGCa -3'
miRNA:   3'- uCUGUCGU------------UGGcCC-UGACGcAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 31658 0.68 0.509312
Target:  5'- cAGGCGGC-ACCGGGGCggGCGgUgGAUg -3'
miRNA:   3'- -UCUGUCGuUGGCCCUGa-CGCaGgUUG- -5'
11489 5' -55.6 NC_003085.1 + 15626 0.68 0.498773
Target:  5'- uGGGcCGGUGGCCGGGcggAgaGCGUCCAcaACa -3'
miRNA:   3'- -UCU-GUCGUUGGCCC---UgaCGCAGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.