miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 43872 0.66 0.502909
Target:  5'- cCUGCAUCCGgGCaaGUaGUgGcGUGCCGGg -3'
miRNA:   3'- -GACGUAGGCgUG--CAgCAgC-CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 14483 0.66 0.496809
Target:  5'- -aGCGUgCGCACGagGUCaucggcuuccugugaGGCGCCu- -3'
miRNA:   3'- gaCGUAgGCGUGCagCAG---------------CCGCGGuc -5'
11490 5' -59 NC_003085.1 + 40482 0.66 0.492761
Target:  5'- cCUGUcgCUGCuggcggGCGUCGUCGa-GCCGGa -3'
miRNA:   3'- -GACGuaGGCG------UGCAGCAGCcgCGGUC- -5'
11490 5' -59 NC_003085.1 + 46118 0.66 0.492761
Target:  5'- -gGCGUCgGggaGCGUCGUCugugcGGCGaCCAGc -3'
miRNA:   3'- gaCGUAGgCg--UGCAGCAG-----CCGC-GGUC- -5'
11490 5' -59 NC_003085.1 + 24505 0.66 0.492761
Target:  5'- aUGCcgCCGUAcucCGUCGUCuGGUagGCCAu -3'
miRNA:   3'- gACGuaGGCGU---GCAGCAG-CCG--CGGUc -5'
11490 5' -59 NC_003085.1 + 16555 0.66 0.492761
Target:  5'- -cGCAUUCGCgACGUCGaaGGCGgaCGGc -3'
miRNA:   3'- gaCGUAGGCG-UGCAGCagCCGCg-GUC- -5'
11490 5' -59 NC_003085.1 + 8234 0.66 0.492761
Target:  5'- uUGUAgaggCCGCACGUCacc-GUGCCAGa -3'
miRNA:   3'- gACGUa---GGCGUGCAGcagcCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 11788 0.66 0.482708
Target:  5'- -cGCGcUCCGgGCGU-GUCGGCugccccaucGCCGGg -3'
miRNA:   3'- gaCGU-AGGCgUGCAgCAGCCG---------CGGUC- -5'
11490 5' -59 NC_003085.1 + 43202 0.66 0.482708
Target:  5'- -cGCAUCCcacgGCgGCGUCGUguaGGCGUCGa -3'
miRNA:   3'- gaCGUAGG----CG-UGCAGCAg--CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 19999 0.66 0.472755
Target:  5'- cCUGCcgCCGU-CGUCGUgGG-GCCGc -3'
miRNA:   3'- -GACGuaGGCGuGCAGCAgCCgCGGUc -5'
11490 5' -59 NC_003085.1 + 32461 0.66 0.462906
Target:  5'- --cCAUCCGCGCuucucgucGcCGUCGGCGUCGc -3'
miRNA:   3'- gacGUAGGCGUG--------CaGCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 20347 0.66 0.462906
Target:  5'- cCUGguUCCGCgccGCGUCGcCGcugcugaCGCCGGg -3'
miRNA:   3'- -GACguAGGCG---UGCAGCaGCc------GCGGUC- -5'
11490 5' -59 NC_003085.1 + 18963 0.66 0.462906
Target:  5'- cCUGCAUCUGgcUGUCGUCGaguccaggcgucGCGuCCAGg -3'
miRNA:   3'- -GACGUAGGCguGCAGCAGC------------CGC-GGUC- -5'
11490 5' -59 NC_003085.1 + 23307 0.66 0.462906
Target:  5'- -cGgGUCCGCGa--CGUCGGUgGCCAGc -3'
miRNA:   3'- gaCgUAGGCGUgcaGCAGCCG-CGGUC- -5'
11490 5' -59 NC_003085.1 + 29257 0.67 0.44354
Target:  5'- -gGCGUCCGCGuCGUgGcUGGC-CCAGu -3'
miRNA:   3'- gaCGUAGGCGU-GCAgCaGCCGcGGUC- -5'
11490 5' -59 NC_003085.1 + 36958 0.67 0.44354
Target:  5'- -gGCAgggCCGCGgGgccaUGUUGGCGCCGc -3'
miRNA:   3'- gaCGUa--GGCGUgCa---GCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 49287 0.67 0.44354
Target:  5'- cCUGUggCUGCuGCGUCGcgUCGGCGucCCGGg -3'
miRNA:   3'- -GACGuaGGCG-UGCAGC--AGCCGC--GGUC- -5'
11490 5' -59 NC_003085.1 + 20952 0.67 0.434029
Target:  5'- -cGCGUCUGCACGagGUgCGGUgGCUGGc -3'
miRNA:   3'- gaCGUAGGCGUGCagCA-GCCG-CGGUC- -5'
11490 5' -59 NC_003085.1 + 34359 0.67 0.415368
Target:  5'- gCUcCAUCCGCuCGUCGagggugaGGCGCCGu -3'
miRNA:   3'- -GAcGUAGGCGuGCAGCag-----CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 41553 0.67 0.415368
Target:  5'- gCUGCcgCCGCGgcggcaGUCG-CGGgaGCCAGa -3'
miRNA:   3'- -GACGuaGGCGUg-----CAGCaGCCg-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.