miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 48885 0.69 0.507465
Target:  5'- gCCGcaCACGGaGCAuuGCCCGccAGC-CGCg -3'
miRNA:   3'- -GGCa-GUGUC-CGUuuCGGGC--UCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 48810 0.7 0.41802
Target:  5'- aCGUC-CGGGCGGuGCUCGAGCgccUCGa -3'
miRNA:   3'- gGCAGuGUCCGUUuCGGGCUCG---AGCg -5'
11492 5' -55.9 NC_003085.1 + 47852 0.66 0.647964
Target:  5'- gCGUCAucCGGGguGAGgUCGAGCgagacgucagCGCg -3'
miRNA:   3'- gGCAGU--GUCCguUUCgGGCUCGa---------GCG- -5'
11492 5' -55.9 NC_003085.1 + 47511 0.67 0.615025
Target:  5'- cCUGUCGguGGCGAAGCCgcuGC-CGUu -3'
miRNA:   3'- -GGCAGUguCCGUUUCGGgcuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 47114 0.68 0.539088
Target:  5'- cCCGUCGCgcuggacgGGaGCAAGGCCCac-CUUGCg -3'
miRNA:   3'- -GGCAGUG--------UC-CGUUUCGGGcucGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 46447 0.66 0.658928
Target:  5'- aCCGUC-UGGGCGucGUCCGuGCgcccaGCg -3'
miRNA:   3'- -GGCAGuGUCCGUuuCGGGCuCGag---CG- -5'
11492 5' -55.9 NC_003085.1 + 45861 0.69 0.497097
Target:  5'- aCGUC-CAGGCGGAGCCggugGGGCUg-- -3'
miRNA:   3'- gGCAGuGUCCGUUUCGGg---CUCGAgcg -5'
11492 5' -55.9 NC_003085.1 + 45503 0.66 0.691629
Target:  5'- gCCGUCu--GGCuccaucCCCGGGC-CGCg -3'
miRNA:   3'- -GGCAGuguCCGuuuc--GGGCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 44852 0.74 0.232335
Target:  5'- cCCGUCACGacgaaaacGGCAGGGCCCucGCaacCGCa -3'
miRNA:   3'- -GGCAGUGU--------CCGUUUCGGGcuCGa--GCG- -5'
11492 5' -55.9 NC_003085.1 + 44732 0.66 0.669868
Target:  5'- uUCGUgCACGGGaagccGAGuUCCGcGCUCGCu -3'
miRNA:   3'- -GGCA-GUGUCCgu---UUC-GGGCuCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 43908 0.74 0.238462
Target:  5'- aCCGUCGCGGcGCcAGGCCCuuuGCgCGCa -3'
miRNA:   3'- -GGCAGUGUC-CGuUUCGGGcu-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 43602 0.67 0.569186
Target:  5'- -gGUCGCAGGCGcuGCCaucccgagugcaGAGCggGCa -3'
miRNA:   3'- ggCAGUGUCCGUuuCGGg-----------CUCGagCG- -5'
11492 5' -55.9 NC_003085.1 + 40619 0.66 0.647964
Target:  5'- aCGUCAU-GGCc--GCCCcuccuGCUCGCg -3'
miRNA:   3'- gGCAGUGuCCGuuuCGGGcu---CGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 40482 0.72 0.33075
Target:  5'- cCUGUCGCugcuGGCGggcgucgucGAGCCgGAGC-CGCu -3'
miRNA:   3'- -GGCAGUGu---CCGU---------UUCGGgCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 39584 0.67 0.571353
Target:  5'- gCGcCACuGGC-AAGCUgGAGCgcgUCGCg -3'
miRNA:   3'- gGCaGUGuCCGuUUCGGgCUCG---AGCG- -5'
11492 5' -55.9 NC_003085.1 + 39520 0.67 0.571353
Target:  5'- cUCGUCGCuGGCAucGUCCuGGC-CGUu -3'
miRNA:   3'- -GGCAGUGuCCGUuuCGGGcUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 38603 0.79 0.108283
Target:  5'- gCGUCcagcGCAGGaaGAGGCCgGAGCUCGCa -3'
miRNA:   3'- gGCAG----UGUCCg-UUUCGGgCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 38173 0.67 0.593124
Target:  5'- gCCGcggCGCAGGUGuuccCCUGGGCUgGCg -3'
miRNA:   3'- -GGCa--GUGUCCGUuuc-GGGCUCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 36126 0.71 0.363989
Target:  5'- cCCGUCAguccCAGGCAgucgcucucGAGCUUcaggugguugaaGGGCUCGCu -3'
miRNA:   3'- -GGCAGU----GUCCGU---------UUCGGG------------CUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 35379 0.72 0.33075
Target:  5'- aCGUUcucCcGGCGGAGUCCGAggcGCUCGCa -3'
miRNA:   3'- gGCAGu--GuCCGUUUCGGGCU---CGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.