miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 5' -57 NC_003085.1 + 45773 0.66 0.590538
Target:  5'- cGGaCGCGGC-GUC-AgGACUCGCcgCg -3'
miRNA:   3'- uCC-GCGUCGuCAGcUgCUGAGCGuaG- -5'
11508 5' -57 NC_003085.1 + 24200 0.66 0.579587
Target:  5'- cGGGCGC-GCcGaCGACGACgccCGCcgCg -3'
miRNA:   3'- -UCCGCGuCGuCaGCUGCUGa--GCGuaG- -5'
11508 5' -57 NC_003085.1 + 28240 0.66 0.579587
Target:  5'- uGGCgGCAGCGGUacuuggGACGGCUC-CAc- -3'
miRNA:   3'- uCCG-CGUCGUCAg-----CUGCUGAGcGUag -5'
11508 5' -57 NC_003085.1 + 8183 0.66 0.56868
Target:  5'- -uGCGCAGCGcuUCGGCGuCUCGgUGUCg -3'
miRNA:   3'- ucCGCGUCGUc-AGCUGCuGAGC-GUAG- -5'
11508 5' -57 NC_003085.1 + 5049 0.66 0.557825
Target:  5'- cAGGCGCAGgGacuccUGACGGCugggcaucguggUCGCGUCa -3'
miRNA:   3'- -UCCGCGUCgUca---GCUGCUG------------AGCGUAG- -5'
11508 5' -57 NC_003085.1 + 15534 0.66 0.54703
Target:  5'- uGGCGCAgGCGGUUGAgccCGAgUacuccaguugCGCGUCa -3'
miRNA:   3'- uCCGCGU-CGUCAGCU---GCUgA----------GCGUAG- -5'
11508 5' -57 NC_003085.1 + 14908 0.66 0.54703
Target:  5'- cGGCGCAcGCGGgccggcuggUGGCG-CUCGCGg- -3'
miRNA:   3'- uCCGCGU-CGUCa--------GCUGCuGAGCGUag -5'
11508 5' -57 NC_003085.1 + 34313 0.66 0.54703
Target:  5'- aGGGgGCAGUAGUgCGucuCGuGCUCGUcgCa -3'
miRNA:   3'- -UCCgCGUCGUCA-GCu--GC-UGAGCGuaG- -5'
11508 5' -57 NC_003085.1 + 26034 0.67 0.536302
Target:  5'- -uGCGcCAGCAGUUGAaggagcagGGCgagCGCAUCg -3'
miRNA:   3'- ucCGC-GUCGUCAGCUg-------CUGa--GCGUAG- -5'
11508 5' -57 NC_003085.1 + 33221 0.67 0.536302
Target:  5'- cGGCGCAGCacgaGGaUGACGACgccaGCcgCg -3'
miRNA:   3'- uCCGCGUCG----UCaGCUGCUGag--CGuaG- -5'
11508 5' -57 NC_003085.1 + 31789 0.67 0.536302
Target:  5'- uGGGCGaAGCGGccCGGCcGCUCGCGa- -3'
miRNA:   3'- -UCCGCgUCGUCa-GCUGcUGAGCGUag -5'
11508 5' -57 NC_003085.1 + 24699 0.67 0.536302
Target:  5'- uGGUGCuggacGGCGGcaUCGGCGGCUuCGCGg- -3'
miRNA:   3'- uCCGCG-----UCGUC--AGCUGCUGA-GCGUag -5'
11508 5' -57 NC_003085.1 + 16387 0.67 0.524587
Target:  5'- cGGGCaaaguugGCAGguGUCGAgGGCgcguugaaGCGUCu -3'
miRNA:   3'- -UCCG-------CGUCguCAGCUgCUGag------CGUAG- -5'
11508 5' -57 NC_003085.1 + 40981 0.67 0.504589
Target:  5'- cGGGC-CAGCGccUCGGCGGCcuucuggCGCGUCa -3'
miRNA:   3'- -UCCGcGUCGUc-AGCUGCUGa------GCGUAG- -5'
11508 5' -57 NC_003085.1 + 6289 0.67 0.504589
Target:  5'- -cGCGCGGCGGUgGAgCGACUggaGCAg- -3'
miRNA:   3'- ucCGCGUCGUCAgCU-GCUGAg--CGUag -5'
11508 5' -57 NC_003085.1 + 7138 0.67 0.504589
Target:  5'- uGGUGaCAccGCAGcCGACGAaucCGCAUCg -3'
miRNA:   3'- uCCGC-GU--CGUCaGCUGCUga-GCGUAG- -5'
11508 5' -57 NC_003085.1 + 27972 0.67 0.503545
Target:  5'- gGGGCGggaaguuguacuuCGGCAccGUCGACGGa-CGCGUCu -3'
miRNA:   3'- -UCCGC-------------GUCGU--CAGCUGCUgaGCGUAG- -5'
11508 5' -57 NC_003085.1 + 42750 0.67 0.494196
Target:  5'- cGGGCGCGGUGGaCGGCauccaucGC-CGCGUCg -3'
miRNA:   3'- -UCCGCGUCGUCaGCUGc------UGaGCGUAG- -5'
11508 5' -57 NC_003085.1 + 2360 0.67 0.494196
Target:  5'- gAGGCGCAGUgcgAGgccgCGGCGcgcgagcuCUCGCAg- -3'
miRNA:   3'- -UCCGCGUCG---UCa---GCUGCu-------GAGCGUag -5'
11508 5' -57 NC_003085.1 + 34787 0.67 0.483903
Target:  5'- cAGGCGCAGUA--CGACGAg-CGguUCa -3'
miRNA:   3'- -UCCGCGUCGUcaGCUGCUgaGCguAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.