miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 24578 0.65 0.261601
Target:  5'- aGGCGGCccuGGaACUGGGCGccGCUgcaggugagguugCCGGCc -3'
miRNA:   3'- -CCGCCGu--CC-UGGCCCGC--CGGa------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 48494 0.66 0.228272
Target:  5'- cGGCGGCGuGuccugccCCGGcaGCGGCCugUCUGGCa -3'
miRNA:   3'- -CCGCCGUcCu------GGCC--CGCCGG--AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46263 0.66 0.251692
Target:  5'- uGCGGCAucGGGCCaGGGCccgcgagaggacGGCUacuUCUGGCu -3'
miRNA:   3'- cCGCCGU--CCUGG-CCCG------------CCGG---AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 31659 0.66 0.251692
Target:  5'- aGGCGGCAccGGGgCGGGCGGUggaUgUGGg -3'
miRNA:   3'- -CCGCCGU--CCUgGCCCGCCGg--AgGCUg -5'
11510 5' -65.5 NC_003085.1 + 39442 0.66 0.249869
Target:  5'- uGGCGcaaAGGACuCGGGCGGCaaugugucgugugagUCGGCg -3'
miRNA:   3'- -CCGCcg-UCCUG-GCCCGCCGga-------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26947 0.66 0.245657
Target:  5'- cGCGGCGcu-UCGuGCGGCUUCCGAUg -3'
miRNA:   3'- cCGCCGUccuGGCcCGCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 9208 0.66 0.245657
Target:  5'- gGGgGGCGGGAC--GuaGGCC-CCGGCg -3'
miRNA:   3'- -CCgCCGUCCUGgcCcgCCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 32387 0.66 0.233948
Target:  5'- -uCGGaCuGGugUGGGCGGCCguacuUCuCGACg -3'
miRNA:   3'- ccGCC-GuCCugGCCCGCCGG-----AG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 11308 0.66 0.232804
Target:  5'- cGCGGCGGGgagcgccACCaccaacgccagcaGGGCGGCgagcCUCaCGGCa -3'
miRNA:   3'- cCGCCGUCC-------UGG-------------CCCGCCG----GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 46217 0.66 0.251692
Target:  5'- uGGCgGGCgAGuGugUGGGcCGGCCcagguagcgCCGGCa -3'
miRNA:   3'- -CCG-CCG-UC-CugGCCC-GCCGGa--------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 37340 0.66 0.257848
Target:  5'- cGGuCGGCaccgaAGGcCuCGGG-GGCgUCCGACu -3'
miRNA:   3'- -CC-GCCG-----UCCuG-GCCCgCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 24186 0.66 0.257848
Target:  5'- cGCGGUgAGGuagaCGGGCGcGCCgacgaCGACg -3'
miRNA:   3'- cCGCCG-UCCug--GCCCGC-CGGag---GCUG- -5'
11510 5' -65.5 NC_003085.1 + 35955 0.66 0.257848
Target:  5'- uGGCGuCGGGaACCGuuucgcguaGGgGGCCaggCCGACg -3'
miRNA:   3'- -CCGCcGUCC-UGGC---------CCgCCGGa--GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 18107 0.66 0.239743
Target:  5'- aGCGGCuGcGCauGGCGGCCUaCCGGu -3'
miRNA:   3'- cCGCCGuCcUGgcCCGCCGGA-GGCUg -5'
11510 5' -65.5 NC_003085.1 + 11970 0.66 0.233948
Target:  5'- gGGCGGCGugagcGGAUUGGuccucuUGGCCUgCGGCa -3'
miRNA:   3'- -CCGCCGU-----CCUGGCCc-----GCCGGAgGCUG- -5'
11510 5' -65.5 NC_003085.1 + 8842 0.67 0.19662
Target:  5'- cGCGaGCAGGAg-GGGCGGCCa-UGACg -3'
miRNA:   3'- cCGC-CGUCCUggCCCGCCGGagGCUG- -5'
11510 5' -65.5 NC_003085.1 + 35721 0.67 0.19125
Target:  5'- uGGCGGCcacggcgAGGGCaGGGUGGCCgauguccucgCUGAg -3'
miRNA:   3'- -CCGCCG-------UCCUGgCCCGCCGGa---------GGCUg -5'
11510 5' -65.5 NC_003085.1 + 7333 0.67 0.205691
Target:  5'- aGGCGGCugAGGACgCGGGCuacacgcgccccuggGcGCCgcuccaguacgaggCCGACg -3'
miRNA:   3'- -CCGCCG--UCCUG-GCCCG---------------C-CGGa-------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 48526 0.67 0.206721
Target:  5'- cGGCGGCgAGGGCgCGGGCcuuccaGuCCUCCu-- -3'
miRNA:   3'- -CCGCCG-UCCUG-GCCCGc-----C-GGAGGcug -5'
11510 5' -65.5 NC_003085.1 + 23213 0.67 0.201616
Target:  5'- --aGGCAGuGGCCGGGCuGC-UCCaGACg -3'
miRNA:   3'- ccgCCGUC-CUGGCCCGcCGgAGG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.