Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11510 | 5' | -65.5 | NC_003085.1 | + | 290 | 1.09 | 0.000097 |
Target: 5'- cGGCGGCAGGACCGGGCGGCCUCCGACc -3' miRNA: 3'- -CCGCCGUCCUGGCCCGCCGGAGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 546 | 0.71 | 0.102787 |
Target: 5'- cGGCaGcCAGGGCgGGGUGGCCgUCGAa -3' miRNA: 3'- -CCGcC-GUCCUGgCCCGCCGGaGGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 4097 | 0.7 | 0.117344 |
Target: 5'- -cUGGguGGGCCGGGCGGUC-CaGGCu -3' miRNA: 3'- ccGCCguCCUGGCCCGCCGGaGgCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 5229 | 0.68 | 0.173237 |
Target: 5'- cGGCccGGCAGGAa---GCGGCCUCCaACg -3' miRNA: 3'- -CCG--CCGUCCUggccCGCCGGAGGcUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 7333 | 0.67 | 0.205691 |
Target: 5'- aGGCGGCugAGGACgCGGGCuacacgcgccccuggGcGCCgcuccaguacgaggCCGACg -3' miRNA: 3'- -CCGCCG--UCCUG-GCCCG---------------C-CGGa-------------GGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 7631 | 0.71 | 0.097454 |
Target: 5'- --gGGCGGGACUcauggggcgcuuGGGCGGCg-CCGACa -3' miRNA: 3'- ccgCCGUCCUGG------------CCCGCCGgaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 8355 | 0.67 | 0.201616 |
Target: 5'- aGCGGCuGGAagaaaGGGUGGCCggagccagCCGGa -3' miRNA: 3'- cCGCCGuCCUgg---CCCGCCGGa-------GGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 8653 | 0.69 | 0.156349 |
Target: 5'- aGGcCGGcCGGGACgCGcGUGGCCUUgGGCg -3' miRNA: 3'- -CC-GCC-GUCCUG-GCcCGCCGGAGgCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 8842 | 0.67 | 0.19662 |
Target: 5'- cGCGaGCAGGAg-GGGCGGCCa-UGACg -3' miRNA: 3'- cCGC-CGUCCUggCCCGCCGGagGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 9036 | 0.72 | 0.085245 |
Target: 5'- cGGCGGCAGG-Ca--GCGcGCCUCCGAa -3' miRNA: 3'- -CCGCCGUCCuGgccCGC-CGGAGGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 9059 | 0.71 | 0.100087 |
Target: 5'- gGGCGGCAGGugUGGugguuCGGCC-CCaGCa -3' miRNA: 3'- -CCGCCGUCCugGCCc----GCCGGaGGcUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 9208 | 0.66 | 0.245657 |
Target: 5'- gGGgGGCGGGAC--GuaGGCC-CCGGCg -3' miRNA: 3'- -CCgCCGUCCUGgcCcgCCGGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 10153 | 0.76 | 0.040759 |
Target: 5'- cGCGGCggggaguaccgcgAGGACCGGGCGGaC-CCGGCu -3' miRNA: 3'- cCGCCG-------------UCCUGGCCCGCCgGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 11308 | 0.66 | 0.232804 |
Target: 5'- cGCGGCGGGgagcgccACCaccaacgccagcaGGGCGGCgagcCUCaCGGCa -3' miRNA: 3'- cCGCCGUCC-------UGG-------------CCCGCCG----GAG-GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 11970 | 0.66 | 0.233948 |
Target: 5'- gGGCGGCGugagcGGAUUGGuccucuUGGCCUgCGGCa -3' miRNA: 3'- -CCGCCGU-----CCUGGCCc-----GCCGGAgGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 12241 | 0.67 | 0.215122 |
Target: 5'- cGGCGGCuGGGCCGccagaauugaaGGCCgCUGGCg -3' miRNA: 3'- -CCGCCGuCCUGGCccg--------CCGGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 14906 | 0.68 | 0.164599 |
Target: 5'- uGCGGCGcacgcGGGCCGgcuGGUGGCgCUCgCGGCc -3' miRNA: 3'- cCGCCGU-----CCUGGC---CCGCCG-GAG-GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 18107 | 0.66 | 0.239743 |
Target: 5'- aGCGGCuGcGCauGGCGGCCUaCCGGu -3' miRNA: 3'- cCGCCGuCcUGgcCCGCCGGA-GGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 18276 | 0.68 | 0.168868 |
Target: 5'- gGGCGaCAGGgaagaagccACCGGGCGgugcacGCC-CCGGCg -3' miRNA: 3'- -CCGCcGUCC---------UGGCCCGC------CGGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 19210 | 0.74 | 0.063319 |
Target: 5'- gGGCGGCgGGGGCUGGGCgccgcgcaaGGCCUgCGcCa -3' miRNA: 3'- -CCGCCG-UCCUGGCCCG---------CCGGAgGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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