miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 48798 0.67 0.217268
Target:  5'- aGGUGGCcGGcgacguCCGGGCGGUgCUCgagcgccuCGACg -3'
miRNA:   3'- -CCGCCGuCCu-----GGCCCGCCG-GAG--------GCUG- -5'
11510 5' -65.5 NC_003085.1 + 48526 0.67 0.206721
Target:  5'- cGGCGGCgAGGGCgCGGGCcuuccaGuCCUCCu-- -3'
miRNA:   3'- -CCGCCG-UCCUG-GCCCGc-----C-GGAGGcug -5'
11510 5' -65.5 NC_003085.1 + 48494 0.66 0.228272
Target:  5'- cGGCGGCGuGuccugccCCGGcaGCGGCCugUCUGGCa -3'
miRNA:   3'- -CCGCCGUcCu------GGCC--CGCCGG--AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46925 0.68 0.186952
Target:  5'- aGGCGGCacAGGuuCGGcGCGcGCaggggCCGACg -3'
miRNA:   3'- -CCGCCG--UCCugGCC-CGC-CGga---GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46263 0.66 0.251692
Target:  5'- uGCGGCAucGGGCCaGGGCccgcgagaggacGGCUacuUCUGGCu -3'
miRNA:   3'- cCGCCGU--CCUGG-CCCG------------CCGG---AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46217 0.66 0.251692
Target:  5'- uGGCgGGCgAGuGugUGGGcCGGCCcagguagcgCCGGCa -3'
miRNA:   3'- -CCG-CCG-UC-CugGCCC-GCCGGa--------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 44339 0.74 0.065063
Target:  5'- gGGCGGCgacgcGGGAgaGGGCGGCCaaUCCcGCg -3'
miRNA:   3'- -CCGCCG-----UCCUggCCCGCCGG--AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 42752 0.72 0.080563
Target:  5'- cGGCGGCAugggugcGGugCaGGGCGGCCgcaagCCG-Cu -3'
miRNA:   3'- -CCGCCGU-------CCugG-CCCGCCGGa----GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 42719 0.68 0.168868
Target:  5'- cGCGGCAGG-CCGGGCaGUCg--GACc -3'
miRNA:   3'- cCGCCGUCCuGGCCCGcCGGaggCUG- -5'
11510 5' -65.5 NC_003085.1 + 40978 0.69 0.156349
Target:  5'- uGGCGGgcCAGcGCCucGGCGGCCUuCUGGCg -3'
miRNA:   3'- -CCGCC--GUCcUGGc-CCGCCGGA-GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 40352 0.69 0.148476
Target:  5'- gGGCGGUGGGcaaGCCGcugcugcccgcGGCGcugacGCCUCUGGCg -3'
miRNA:   3'- -CCGCCGUCC---UGGC-----------CCGC-----CGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 39442 0.66 0.249869
Target:  5'- uGGCGcaaAGGACuCGGGCGGCaaugugucgugugagUCGGCg -3'
miRNA:   3'- -CCGCcg-UCCUG-GCCCGCCGga-------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 38199 0.69 0.136984
Target:  5'- uGGCGGCA--ACuCGGGCGGCgguggcucgugcaCUCuCGACg -3'
miRNA:   3'- -CCGCCGUccUG-GCCCGCCG-------------GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 37896 0.68 0.168437
Target:  5'- aGGCgcgGGCAGGACggugcguUGGcGCaGGCC-CCGGCg -3'
miRNA:   3'- -CCG---CCGUCCUG-------GCC-CG-CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 37340 0.66 0.257848
Target:  5'- cGGuCGGCaccgaAGGcCuCGGG-GGCgUCCGACu -3'
miRNA:   3'- -CC-GCCG-----UCCuG-GCCCgCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 36957 0.67 0.222162
Target:  5'- --aGGCAGGGCCGcGG-GGCCauguuggcgccgcUUCGACu -3'
miRNA:   3'- ccgCCGUCCUGGC-CCgCCGG-------------AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 36861 0.72 0.092383
Target:  5'- uGGCGGCA--ACCcGGUGGUgUCCGGCa -3'
miRNA:   3'- -CCGCCGUccUGGcCCGCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 36159 0.7 0.123688
Target:  5'- aGGUGGUugaAGGGCuCGcuGgGGCCUCCGAUg -3'
miRNA:   3'- -CCGCCG---UCCUG-GCc-CgCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 35955 0.66 0.257848
Target:  5'- uGGCGuCGGGaACCGuuucgcguaGGgGGCCaggCCGACg -3'
miRNA:   3'- -CCGCcGUCC-UGGC---------CCgCCGGa--GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 35721 0.67 0.19125
Target:  5'- uGGCGGCcacggcgAGGGCaGGGUGGCCgauguccucgCUGAg -3'
miRNA:   3'- -CCGCCG-------UCCUGgCCCGCCGGa---------GGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.