miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 23213 0.67 0.201616
Target:  5'- --aGGCAGuGGCCGGGCuGC-UCCaGACg -3'
miRNA:   3'- ccgCCGUC-CUGGCCCGcCGgAGG-CUG- -5'
11510 5' -65.5 NC_003085.1 + 19599 0.69 0.140965
Target:  5'- aGGUGGCAgggaaggacgcGGAgUGGGUGGCCgaguacaUCGACa -3'
miRNA:   3'- -CCGCCGU-----------CCUgGCCCGCCGGa------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 40352 0.69 0.148476
Target:  5'- gGGCGGUGGGcaaGCCGcugcugcccgcGGCGcugacGCCUCUGGCg -3'
miRNA:   3'- -CCGCCGUCC---UGGC-----------CCGC-----CGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 24343 0.69 0.160426
Target:  5'- cGCGGCGcucuacGGcgaCGGGaCGGCCUuuGGCg -3'
miRNA:   3'- cCGCCGU------CCug-GCCC-GCCGGAggCUG- -5'
11510 5' -65.5 NC_003085.1 + 18276 0.68 0.168868
Target:  5'- gGGCGaCAGGgaagaagccACCGGGCGgugcacGCC-CCGGCg -3'
miRNA:   3'- -CCGCcGUCC---------UGGCCCGC------CGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 22908 0.68 0.173237
Target:  5'- cGGCGG-AGGcuGCCgGGGCGaagcCCUCCGAg -3'
miRNA:   3'- -CCGCCgUCC--UGG-CCCGCc---GGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 46925 0.68 0.186952
Target:  5'- aGGCGGCacAGGuuCGGcGCGcGCaggggCCGACg -3'
miRNA:   3'- -CCGCCG--UCCugGCC-CGC-CGga---GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 35721 0.67 0.19125
Target:  5'- uGGCGGCcacggcgAGGGCaGGGUGGCCgauguccucgCUGAg -3'
miRNA:   3'- -CCGCCG-------UCCUGgCCCGCCGGa---------GGCUg -5'
11510 5' -65.5 NC_003085.1 + 8842 0.67 0.19662
Target:  5'- cGCGaGCAGGAg-GGGCGGCCa-UGACg -3'
miRNA:   3'- cCGC-CGUCCUggCCCGCCGGagGCUG- -5'
11510 5' -65.5 NC_003085.1 + 38199 0.69 0.136984
Target:  5'- uGGCGGCA--ACuCGGGCGGCgguggcucgugcaCUCuCGACg -3'
miRNA:   3'- -CCGCCGUccUG-GCCCGCCG-------------GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 30003 0.7 0.13035
Target:  5'- aGCGGCc---CUGGGCGGCCUUggCGACg -3'
miRNA:   3'- cCGCCGuccuGGCCCGCCGGAG--GCUG- -5'
11510 5' -65.5 NC_003085.1 + 26134 0.7 0.126978
Target:  5'- cGCGGCcguGGAacUCGGGCugcuGGCCaCCGACg -3'
miRNA:   3'- cCGCCGu--CCU--GGCCCG----CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 20108 0.74 0.065063
Target:  5'- aGGUGGCGGGGCUGGagucCGGCCUagaGGCg -3'
miRNA:   3'- -CCGCCGUCCUGGCCc---GCCGGAgg-CUG- -5'
11510 5' -65.5 NC_003085.1 + 44339 0.74 0.065063
Target:  5'- gGGCGGCgacgcGGGAgaGGGCGGCCaaUCCcGCg -3'
miRNA:   3'- -CCGCCG-----UCCUggCCCGCCGG--AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 36861 0.72 0.092383
Target:  5'- uGGCGGCA--ACCcGGUGGUgUCCGGCa -3'
miRNA:   3'- -CCGCCGUccUGGcCCGCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 25302 0.71 0.097454
Target:  5'- cGGcCGGcCAGGuggacgacGCCGuGGUGGCCaCCGACa -3'
miRNA:   3'- -CC-GCC-GUCC--------UGGC-CCGCCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 9059 0.71 0.100087
Target:  5'- gGGCGGCAGGugUGGugguuCGGCC-CCaGCa -3'
miRNA:   3'- -CCGCCGUCCugGCCc----GCCGGaGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 546 0.71 0.102787
Target:  5'- cGGCaGcCAGGGCgGGGUGGCCgUCGAa -3'
miRNA:   3'- -CCGcC-GUCCUGgCCCGCCGGaGGCUg -5'
11510 5' -65.5 NC_003085.1 + 25450 0.7 0.120477
Target:  5'- cGGCGGCcGGuuuCUGGGUGGUCggCCGcCg -3'
miRNA:   3'- -CCGCCGuCCu--GGCCCGCCGGa-GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 31665 0.7 0.126978
Target:  5'- cGGCGGCAgauuggucGGACuCGGGCgggGGCCcUUGGCu -3'
miRNA:   3'- -CCGCCGU--------CCUG-GCCCG---CCGGaGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.