miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 9059 0.71 0.100087
Target:  5'- gGGCGGCAGGugUGGugguuCGGCC-CCaGCa -3'
miRNA:   3'- -CCGCCGUCCugGCCc----GCCGGaGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 546 0.71 0.102787
Target:  5'- cGGCaGcCAGGGCgGGGUGGCCgUCGAa -3'
miRNA:   3'- -CCGcC-GUCCUGgCCCGCCGGaGGCUg -5'
11510 5' -65.5 NC_003085.1 + 25450 0.7 0.120477
Target:  5'- cGGCGGCcGGuuuCUGGGUGGUCggCCGcCg -3'
miRNA:   3'- -CCGCCGuCCu--GGCCCGCCGGa-GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 31665 0.7 0.126978
Target:  5'- cGGCGGCAgauuggucGGACuCGGGCgggGGCCcUUGGCu -3'
miRNA:   3'- -CCGCCGU--------CCUG-GCCCG---CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26134 0.7 0.126978
Target:  5'- cGCGGCcguGGAacUCGGGCugcuGGCCaCCGACg -3'
miRNA:   3'- cCGCCGu--CCU--GGCCCG----CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 30003 0.7 0.13035
Target:  5'- aGCGGCc---CUGGGCGGCCUUggCGACg -3'
miRNA:   3'- cCGCCGuccuGGCCCGCCGGAG--GCUG- -5'
11510 5' -65.5 NC_003085.1 + 38199 0.69 0.136984
Target:  5'- uGGCGGCA--ACuCGGGCGGCgguggcucgugcaCUCuCGACg -3'
miRNA:   3'- -CCGCCGUccUG-GCCCGCCG-------------GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 19599 0.69 0.140965
Target:  5'- aGGUGGCAgggaaggacgcGGAgUGGGUGGCCgaguacaUCGACa -3'
miRNA:   3'- -CCGCCGU-----------CCUgGCCCGCCGGa------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26947 0.66 0.245657
Target:  5'- cGCGGCGcu-UCGuGCGGCUUCCGAUg -3'
miRNA:   3'- cCGCCGUccuGGCcCGCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 9208 0.66 0.245657
Target:  5'- gGGgGGCGGGAC--GuaGGCC-CCGGCg -3'
miRNA:   3'- -CCgCCGUCCUGgcCcgCCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 32387 0.66 0.233948
Target:  5'- -uCGGaCuGGugUGGGCGGCCguacuUCuCGACg -3'
miRNA:   3'- ccGCC-GuCCugGCCCGCCGG-----AG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 11308 0.66 0.232804
Target:  5'- cGCGGCGGGgagcgccACCaccaacgccagcaGGGCGGCgagcCUCaCGGCa -3'
miRNA:   3'- cCGCCGUCC-------UGG-------------CCCGCCG----GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 48494 0.66 0.228272
Target:  5'- cGGCGGCGuGuccugccCCGGcaGCGGCCugUCUGGCa -3'
miRNA:   3'- -CCGCCGUcCu------GGCC--CGCCGG--AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 39442 0.66 0.249869
Target:  5'- uGGCGcaaAGGACuCGGGCGGCaaugugucgugugagUCGGCg -3'
miRNA:   3'- -CCGCcg-UCCUG-GCCCGCCGga-------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 31659 0.66 0.251692
Target:  5'- aGGCGGCAccGGGgCGGGCGGUggaUgUGGg -3'
miRNA:   3'- -CCGCCGU--CCUgGCCCGCCGg--AgGCUg -5'
11510 5' -65.5 NC_003085.1 + 46263 0.66 0.251692
Target:  5'- uGCGGCAucGGGCCaGGGCccgcgagaggacGGCUacuUCUGGCu -3'
miRNA:   3'- cCGCCGU--CCUGG-CCCG------------CCGG---AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46217 0.66 0.251692
Target:  5'- uGGCgGGCgAGuGugUGGGcCGGCCcagguagcgCCGGCa -3'
miRNA:   3'- -CCG-CCG-UC-CugGCCC-GCCGGa--------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 37340 0.66 0.257848
Target:  5'- cGGuCGGCaccgaAGGcCuCGGG-GGCgUCCGACu -3'
miRNA:   3'- -CC-GCCG-----UCCuG-GCCCgCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 24186 0.66 0.257848
Target:  5'- cGCGGUgAGGuagaCGGGCGcGCCgacgaCGACg -3'
miRNA:   3'- cCGCCG-UCCug--GCCCGC-CGGag---GCUG- -5'
11510 5' -65.5 NC_003085.1 + 290 1.09 0.000097
Target:  5'- cGGCGGCAGGACCGGGCGGCCUCCGACc -3'
miRNA:   3'- -CCGCCGUCCUGGCCCGCCGGAGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.