miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 19599 0.69 0.140965
Target:  5'- aGGUGGCAgggaaggacgcGGAgUGGGUGGCCgaguacaUCGACa -3'
miRNA:   3'- -CCGCCGU-----------CCUgGCCCGCCGGa------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 20108 0.74 0.065063
Target:  5'- aGGUGGCGGGGCUGGagucCGGCCUagaGGCg -3'
miRNA:   3'- -CCGCCGUCCUGGCCc---GCCGGAgg-CUG- -5'
11510 5' -65.5 NC_003085.1 + 22908 0.68 0.173237
Target:  5'- cGGCGG-AGGcuGCCgGGGCGaagcCCUCCGAg -3'
miRNA:   3'- -CCGCCgUCC--UGG-CCCGCc---GGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 23213 0.67 0.201616
Target:  5'- --aGGCAGuGGCCGGGCuGC-UCCaGACg -3'
miRNA:   3'- ccgCCGUC-CUGGCCCGcCGgAGG-CUG- -5'
11510 5' -65.5 NC_003085.1 + 24186 0.66 0.257848
Target:  5'- cGCGGUgAGGuagaCGGGCGcGCCgacgaCGACg -3'
miRNA:   3'- cCGCCG-UCCug--GCCCGC-CGGag---GCUG- -5'
11510 5' -65.5 NC_003085.1 + 24343 0.69 0.160426
Target:  5'- cGCGGCGcucuacGGcgaCGGGaCGGCCUuuGGCg -3'
miRNA:   3'- cCGCCGU------CCug-GCCC-GCCGGAggCUG- -5'
11510 5' -65.5 NC_003085.1 + 24578 0.65 0.261601
Target:  5'- aGGCGGCccuGGaACUGGGCGccGCUgcaggugagguugCCGGCc -3'
miRNA:   3'- -CCGCCGu--CC-UGGCCCGC--CGGa------------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 25302 0.71 0.097454
Target:  5'- cGGcCGGcCAGGuggacgacGCCGuGGUGGCCaCCGACa -3'
miRNA:   3'- -CC-GCC-GUCC--------UGGC-CCGCCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 25450 0.7 0.120477
Target:  5'- cGGCGGCcGGuuuCUGGGUGGUCggCCGcCg -3'
miRNA:   3'- -CCGCCGuCCu--GGCCCGCCGGa-GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 26134 0.7 0.126978
Target:  5'- cGCGGCcguGGAacUCGGGCugcuGGCCaCCGACg -3'
miRNA:   3'- cCGCCGu--CCU--GGCCCG----CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26221 0.71 0.100087
Target:  5'- gGGCGGCGcGGugCGaagcgcGGCGGCCgUCUGGa -3'
miRNA:   3'- -CCGCCGU-CCugGC------CCGCCGG-AGGCUg -5'
11510 5' -65.5 NC_003085.1 + 26456 0.69 0.144676
Target:  5'- gGGCGcCAGGACUGcGGCGcgcgcaCCUCUGGCu -3'
miRNA:   3'- -CCGCcGUCCUGGC-CCGCc-----GGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26496 0.76 0.040871
Target:  5'- gGGUGGCA-GACUGGGcCGGCUcgUCCGGCu -3'
miRNA:   3'- -CCGCCGUcCUGGCCC-GCCGG--AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26947 0.66 0.245657
Target:  5'- cGCGGCGcu-UCGuGCGGCUUCCGAUg -3'
miRNA:   3'- cCGCCGUccuGGCcCGCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 27352 0.68 0.164599
Target:  5'- cGGCGcCGGGcucuGCUGGGCGGCCUgCu-- -3'
miRNA:   3'- -CCGCcGUCC----UGGCCCGCCGGAgGcug -5'
11510 5' -65.5 NC_003085.1 + 28378 0.69 0.152366
Target:  5'- gGGUGGCAGGACUGGcCGuccuuaccGuCCUUCGGCu -3'
miRNA:   3'- -CCGCCGUCCUGGCCcGC--------C-GGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 29160 0.72 0.085245
Target:  5'- aGGUGGCGGGcgcGuuGGGCacGGCCUUgGGCu -3'
miRNA:   3'- -CCGCCGUCC---UggCCCG--CCGGAGgCUG- -5'
11510 5' -65.5 NC_003085.1 + 29478 0.69 0.152366
Target:  5'- cGGCGGCAGGGCCGuacuUGGCCaggaacugcUCCaGCa -3'
miRNA:   3'- -CCGCCGUCCUGGCcc--GCCGG---------AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 30003 0.7 0.13035
Target:  5'- aGCGGCc---CUGGGCGGCCUUggCGACg -3'
miRNA:   3'- cCGCCGuccuGGCCCGCCGGAG--GCUG- -5'
11510 5' -65.5 NC_003085.1 + 31659 0.66 0.251692
Target:  5'- aGGCGGCAccGGGgCGGGCGGUggaUgUGGg -3'
miRNA:   3'- -CCGCCGU--CCUgGCCCGCCGg--AgGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.