miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 31665 0.7 0.126978
Target:  5'- cGGCGGCAgauuggucGGACuCGGGCgggGGCCcUUGGCu -3'
miRNA:   3'- -CCGCCGU--------CCUG-GCCCG---CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 30003 0.7 0.13035
Target:  5'- aGCGGCc---CUGGGCGGCCUUggCGACg -3'
miRNA:   3'- cCGCCGuccuGGCCCGCCGGAG--GCUG- -5'
11510 5' -65.5 NC_003085.1 + 38199 0.69 0.136984
Target:  5'- uGGCGGCA--ACuCGGGCGGCgguggcucgugcaCUCuCGACg -3'
miRNA:   3'- -CCGCCGUccUG-GCCCGCCG-------------GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 19599 0.69 0.140965
Target:  5'- aGGUGGCAgggaaggacgcGGAgUGGGUGGCCgaguacaUCGACa -3'
miRNA:   3'- -CCGCCGU-----------CCUgGCCCGCCGGa------GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26456 0.69 0.144676
Target:  5'- gGGCGcCAGGACUGcGGCGcgcgcaCCUCUGGCu -3'
miRNA:   3'- -CCGCcGUCCUGGC-CCGCc-----GGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 40352 0.69 0.148476
Target:  5'- gGGCGGUGGGcaaGCCGcugcugcccgcGGCGcugacGCCUCUGGCg -3'
miRNA:   3'- -CCGCCGUCC---UGGC-----------CCGC-----CGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 34433 0.69 0.148476
Target:  5'- uGCGGCuuGGGCCGGcccaGCGGCaaguccaguugCUCUGGCu -3'
miRNA:   3'- cCGCCGu-CCUGGCC----CGCCG-----------GAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 28378 0.69 0.152366
Target:  5'- gGGUGGCAGGACUGGcCGuccuuaccGuCCUUCGGCu -3'
miRNA:   3'- -CCGCCGUCCUGGCCcGC--------C-GGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 29478 0.69 0.152366
Target:  5'- cGGCGGCAGGGCCGuacuUGGCCaggaacugcUCCaGCa -3'
miRNA:   3'- -CCGCCGUCCUGGCcc--GCCGG---------AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 8653 0.69 0.156349
Target:  5'- aGGcCGGcCGGGACgCGcGUGGCCUUgGGCg -3'
miRNA:   3'- -CC-GCC-GUCCUG-GCcCGCCGGAGgCUG- -5'
11510 5' -65.5 NC_003085.1 + 40978 0.69 0.156349
Target:  5'- uGGCGGgcCAGcGCCucGGCGGCCUuCUGGCg -3'
miRNA:   3'- -CCGCC--GUCcUGGc-CCGCCGGA-GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 24343 0.69 0.160426
Target:  5'- cGCGGCGcucuacGGcgaCGGGaCGGCCUuuGGCg -3'
miRNA:   3'- cCGCCGU------CCug-GCCC-GCCGGAggCUG- -5'
11510 5' -65.5 NC_003085.1 + 14906 0.68 0.164599
Target:  5'- uGCGGCGcacgcGGGCCGgcuGGUGGCgCUCgCGGCc -3'
miRNA:   3'- cCGCCGU-----CCUGGC---CCGCCG-GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 27352 0.68 0.164599
Target:  5'- cGGCGcCGGGcucuGCUGGGCGGCCUgCu-- -3'
miRNA:   3'- -CCGCcGUCC----UGGCCCGCCGGAgGcug -5'
11510 5' -65.5 NC_003085.1 + 37896 0.68 0.168437
Target:  5'- aGGCgcgGGCAGGACggugcguUGGcGCaGGCC-CCGGCg -3'
miRNA:   3'- -CCG---CCGUCCUG-------GCC-CG-CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 18276 0.68 0.168868
Target:  5'- gGGCGaCAGGgaagaagccACCGGGCGgugcacGCC-CCGGCg -3'
miRNA:   3'- -CCGCcGUCC---------UGGCCCGC------CGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 42719 0.68 0.168868
Target:  5'- cGCGGCAGG-CCGGGCaGUCg--GACc -3'
miRNA:   3'- cCGCCGUCCuGGCCCGcCGGaggCUG- -5'
11510 5' -65.5 NC_003085.1 + 22908 0.68 0.173237
Target:  5'- cGGCGG-AGGcuGCCgGGGCGaagcCCUCCGAg -3'
miRNA:   3'- -CCGCCgUCC--UGG-CCCGCc---GGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 5229 0.68 0.173237
Target:  5'- cGGCccGGCAGGAa---GCGGCCUCCaACg -3'
miRNA:   3'- -CCG--CCGUCCUggccCGCCGGAGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 46925 0.68 0.186952
Target:  5'- aGGCGGCacAGGuuCGGcGCGcGCaggggCCGACg -3'
miRNA:   3'- -CCGCCG--UCCugGCC-CGC-CGga---GGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.