miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 8355 0.67 0.201616
Target:  5'- aGCGGCuGGAagaaaGGGUGGCCggagccagCCGGa -3'
miRNA:   3'- cCGCCGuCCUgg---CCCGCCGGa-------GGCUg -5'
11510 5' -65.5 NC_003085.1 + 23213 0.67 0.201616
Target:  5'- --aGGCAGuGGCCGGGCuGC-UCCaGACg -3'
miRNA:   3'- ccgCCGUC-CUGGCCCGcCGgAGG-CUG- -5'
11510 5' -65.5 NC_003085.1 + 8842 0.67 0.19662
Target:  5'- cGCGaGCAGGAg-GGGCGGCCa-UGACg -3'
miRNA:   3'- cCGC-CGUCCUggCCCGCCGGagGCUG- -5'
11510 5' -65.5 NC_003085.1 + 35721 0.67 0.19125
Target:  5'- uGGCGGCcacggcgAGGGCaGGGUGGCCgauguccucgCUGAg -3'
miRNA:   3'- -CCGCCG-------UCCUGgCCCGCCGGa---------GGCUg -5'
11510 5' -65.5 NC_003085.1 + 35596 0.68 0.186952
Target:  5'- uGCGGCuugccGGGCgCGGGuuGCCgcacaUCCGGCa -3'
miRNA:   3'- cCGCCGu----CCUG-GCCCgcCGG-----AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 46925 0.68 0.186952
Target:  5'- aGGCGGCacAGGuuCGGcGCGcGCaggggCCGACg -3'
miRNA:   3'- -CCGCCG--UCCugGCC-CGC-CGga---GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 22908 0.68 0.173237
Target:  5'- cGGCGG-AGGcuGCCgGGGCGaagcCCUCCGAg -3'
miRNA:   3'- -CCGCCgUCC--UGG-CCCGCc---GGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 5229 0.68 0.173237
Target:  5'- cGGCccGGCAGGAa---GCGGCCUCCaACg -3'
miRNA:   3'- -CCG--CCGUCCUggccCGCCGGAGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 18276 0.68 0.168868
Target:  5'- gGGCGaCAGGgaagaagccACCGGGCGgugcacGCC-CCGGCg -3'
miRNA:   3'- -CCGCcGUCC---------UGGCCCGC------CGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 42719 0.68 0.168868
Target:  5'- cGCGGCAGG-CCGGGCaGUCg--GACc -3'
miRNA:   3'- cCGCCGUCCuGGCCCGcCGGaggCUG- -5'
11510 5' -65.5 NC_003085.1 + 37896 0.68 0.168437
Target:  5'- aGGCgcgGGCAGGACggugcguUGGcGCaGGCC-CCGGCg -3'
miRNA:   3'- -CCG---CCGUCCUG-------GCC-CG-CCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 14906 0.68 0.164599
Target:  5'- uGCGGCGcacgcGGGCCGgcuGGUGGCgCUCgCGGCc -3'
miRNA:   3'- cCGCCGU-----CCUGGC---CCGCCG-GAG-GCUG- -5'
11510 5' -65.5 NC_003085.1 + 27352 0.68 0.164599
Target:  5'- cGGCGcCGGGcucuGCUGGGCGGCCUgCu-- -3'
miRNA:   3'- -CCGCcGUCC----UGGCCCGCCGGAgGcug -5'
11510 5' -65.5 NC_003085.1 + 24343 0.69 0.160426
Target:  5'- cGCGGCGcucuacGGcgaCGGGaCGGCCUuuGGCg -3'
miRNA:   3'- cCGCCGU------CCug-GCCC-GCCGGAggCUG- -5'
11510 5' -65.5 NC_003085.1 + 40978 0.69 0.156349
Target:  5'- uGGCGGgcCAGcGCCucGGCGGCCUuCUGGCg -3'
miRNA:   3'- -CCGCC--GUCcUGGc-CCGCCGGA-GGCUG- -5'
11510 5' -65.5 NC_003085.1 + 8653 0.69 0.156349
Target:  5'- aGGcCGGcCGGGACgCGcGUGGCCUUgGGCg -3'
miRNA:   3'- -CC-GCC-GUCCUG-GCcCGCCGGAGgCUG- -5'
11510 5' -65.5 NC_003085.1 + 29478 0.69 0.152366
Target:  5'- cGGCGGCAGGGCCGuacuUGGCCaggaacugcUCCaGCa -3'
miRNA:   3'- -CCGCCGUCCUGGCcc--GCCGG---------AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 28378 0.69 0.152366
Target:  5'- gGGUGGCAGGACUGGcCGuccuuaccGuCCUUCGGCu -3'
miRNA:   3'- -CCGCCGUCCUGGCCcGC--------C-GGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 34433 0.69 0.148476
Target:  5'- uGCGGCuuGGGCCGGcccaGCGGCaaguccaguugCUCUGGCu -3'
miRNA:   3'- cCGCCGu-CCUGGCC----CGCCG-----------GAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 40352 0.69 0.148476
Target:  5'- gGGCGGUGGGcaaGCCGcugcugcccgcGGCGcugacGCCUCUGGCg -3'
miRNA:   3'- -CCGCCGUCC---UGGC-----------CCGC-----CGGAGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.