miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11510 5' -65.5 NC_003085.1 + 290 1.09 0.000097
Target:  5'- cGGCGGCAGGACCGGGCGGCCUCCGACc -3'
miRNA:   3'- -CCGCCGUCCUGGCCCGCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 34194 0.77 0.037631
Target:  5'- cGCGGCGGGugaGCuCGGccGCGGCCUCCGGg -3'
miRNA:   3'- cCGCCGUCC---UG-GCC--CGCCGGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 10153 0.76 0.040759
Target:  5'- cGCGGCggggaguaccgcgAGGACCGGGCGGaC-CCGGCu -3'
miRNA:   3'- cCGCCG-------------UCCUGGCCCGCCgGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 26496 0.76 0.040871
Target:  5'- gGGUGGCA-GACUGGGcCGGCUcgUCCGGCu -3'
miRNA:   3'- -CCGCCGUcCUGGCCC-GCCGG--AGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 19210 0.74 0.063319
Target:  5'- gGGCGGCgGGGGCUGGGCgccgcgcaaGGCCUgCGcCa -3'
miRNA:   3'- -CCGCCG-UCCUGGCCCG---------CCGGAgGCuG- -5'
11510 5' -65.5 NC_003085.1 + 20108 0.74 0.065063
Target:  5'- aGGUGGCGGGGCUGGagucCGGCCUagaGGCg -3'
miRNA:   3'- -CCGCCGUCCUGGCCc---GCCGGAgg-CUG- -5'
11510 5' -65.5 NC_003085.1 + 44339 0.74 0.065063
Target:  5'- gGGCGGCgacgcGGGAgaGGGCGGCCaaUCCcGCg -3'
miRNA:   3'- -CCGCCG-----UCCUggCCCGCCGG--AGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 42752 0.72 0.080563
Target:  5'- cGGCGGCAugggugcGGugCaGGGCGGCCgcaagCCG-Cu -3'
miRNA:   3'- -CCGCCGU-------CCugG-CCCGCCGGa----GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 9036 0.72 0.085245
Target:  5'- cGGCGGCAGG-Ca--GCGcGCCUCCGAa -3'
miRNA:   3'- -CCGCCGUCCuGgccCGC-CGGAGGCUg -5'
11510 5' -65.5 NC_003085.1 + 29160 0.72 0.085245
Target:  5'- aGGUGGCGGGcgcGuuGGGCacGGCCUUgGGCu -3'
miRNA:   3'- -CCGCCGUCC---UggCCCG--CCGGAGgCUG- -5'
11510 5' -65.5 NC_003085.1 + 36861 0.72 0.092383
Target:  5'- uGGCGGCA--ACCcGGUGGUgUCCGGCa -3'
miRNA:   3'- -CCGCCGUccUGGcCCGCCGgAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 25302 0.71 0.097454
Target:  5'- cGGcCGGcCAGGuggacgacGCCGuGGUGGCCaCCGACa -3'
miRNA:   3'- -CC-GCC-GUCC--------UGGC-CCGCCGGaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 7631 0.71 0.097454
Target:  5'- --gGGCGGGACUcauggggcgcuuGGGCGGCg-CCGACa -3'
miRNA:   3'- ccgCCGUCCUGG------------CCCGCCGgaGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 9059 0.71 0.100087
Target:  5'- gGGCGGCAGGugUGGugguuCGGCC-CCaGCa -3'
miRNA:   3'- -CCGCCGUCCugGCCc----GCCGGaGGcUG- -5'
11510 5' -65.5 NC_003085.1 + 26221 0.71 0.100087
Target:  5'- gGGCGGCGcGGugCGaagcgcGGCGGCCgUCUGGa -3'
miRNA:   3'- -CCGCCGU-CCugGC------CCGCCGG-AGGCUg -5'
11510 5' -65.5 NC_003085.1 + 546 0.71 0.102787
Target:  5'- cGGCaGcCAGGGCgGGGUGGCCgUCGAa -3'
miRNA:   3'- -CCGcC-GUCCUGgCCCGCCGGaGGCUg -5'
11510 5' -65.5 NC_003085.1 + 4097 0.7 0.117344
Target:  5'- -cUGGguGGGCCGGGCGGUC-CaGGCu -3'
miRNA:   3'- ccGCCguCCUGGCCCGCCGGaGgCUG- -5'
11510 5' -65.5 NC_003085.1 + 25450 0.7 0.120477
Target:  5'- cGGCGGCcGGuuuCUGGGUGGUCggCCGcCg -3'
miRNA:   3'- -CCGCCGuCCu--GGCCCGCCGGa-GGCuG- -5'
11510 5' -65.5 NC_003085.1 + 36159 0.7 0.123688
Target:  5'- aGGUGGUugaAGGGCuCGcuGgGGCCUCCGAUg -3'
miRNA:   3'- -CCGCCG---UCCUG-GCc-CgCCGGAGGCUG- -5'
11510 5' -65.5 NC_003085.1 + 31665 0.7 0.126978
Target:  5'- cGGCGGCAgauuggucGGACuCGGGCgggGGCCcUUGGCu -3'
miRNA:   3'- -CCGCCGU--------CCUG-GCCCG---CCGGaGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.