miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11515 5' -62.4 NC_003085.1 + 2296 0.66 0.394571
Target:  5'- cUCCGgcagCACgG-CGCUGGCCUgccucgccacCGGCCGc -3'
miRNA:   3'- -GGGCa---GUGgCaGCGGUCGGA----------GCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 32995 0.66 0.394571
Target:  5'- gCCgGUCGCCGUUGCCGcauucgcgacGUCgaaggcggaCGGCCc -3'
miRNA:   3'- -GGgCAGUGGCAGCGGU----------CGGa--------GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 9764 0.66 0.386872
Target:  5'- cUCCaGUCugCaGggaCGCCAGCCggugcucgacguuggCGGCCGu -3'
miRNA:   3'- -GGG-CAGugG-Ca--GCGGUCGGa--------------GCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 36766 0.66 0.386023
Target:  5'- gCCGgccUCGCCGUCGgCGuacuCCUCGGCg- -3'
miRNA:   3'- gGGC---AGUGGCAGCgGUc---GGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 46832 0.66 0.386023
Target:  5'- cCUCGcCGCCGaguugcgaCGCCagcgucugGGCCUUGGCCu -3'
miRNA:   3'- -GGGCaGUGGCa-------GCGG--------UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 33931 0.66 0.386023
Target:  5'- --aGUCGCCGUgcaguugacuaCGUgGGCCggUGGCCGg -3'
miRNA:   3'- gggCAGUGGCA-----------GCGgUCGGa-GCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 14114 0.66 0.386023
Target:  5'- -aCGgacaCGCCGUCGCgCAGUagCUCGGCa- -3'
miRNA:   3'- ggGCa---GUGGCAGCG-GUCG--GAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 46684 0.66 0.361122
Target:  5'- gCCUGgagCGCCGcCGCU-GCCUgcuucCGGCCa -3'
miRNA:   3'- -GGGCa--GUGGCaGCGGuCGGA-----GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 42532 0.66 0.361122
Target:  5'- -gCGUgGCCuccCGCUucGCCUCGGCCa -3'
miRNA:   3'- ggGCAgUGGca-GCGGu-CGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 25863 0.66 0.353074
Target:  5'- aUCGUCACCGUCGagCAacucGCCgcCGuGCCGg -3'
miRNA:   3'- gGGCAGUGGCAGCg-GU----CGGa-GC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 4432 0.66 0.345154
Target:  5'- gCCCGacggugcuccUCACCGUCGCCG---UCGGCg- -3'
miRNA:   3'- -GGGC----------AGUGGCAGCGGUcggAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 34815 0.67 0.329699
Target:  5'- aCCCGUCACCuccgCGCgAuGCCaUCGGUa- -3'
miRNA:   3'- -GGGCAGUGGca--GCGgU-CGG-AGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 49025 0.67 0.314761
Target:  5'- gUCCuUCACCG-CGaCCAGCgacucUUCGGCCa -3'
miRNA:   3'- -GGGcAGUGGCaGC-GGUCG-----GAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 16493 0.67 0.314027
Target:  5'- uCCCGUCGCUGacggCGCCgaggaagGGUgUCGGCa- -3'
miRNA:   3'- -GGGCAGUGGCa---GCGG-------UCGgAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 41651 0.67 0.307485
Target:  5'- gCCGcUCACCuggUGCUGuGCCUUGGCCa -3'
miRNA:   3'- gGGC-AGUGGca-GCGGU-CGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 14786 0.67 0.307485
Target:  5'- -aCGUCcCUGUCggGCUGGCCuUCGGCCu -3'
miRNA:   3'- ggGCAGuGGCAG--CGGUCGG-AGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 12097 0.67 0.300339
Target:  5'- gUCGcgcagCACCGgcaggugCGCCAGCgUCaGGCCGc -3'
miRNA:   3'- gGGCa----GUGGCa------GCGGUCGgAG-CCGGC- -5'
11515 5' -62.4 NC_003085.1 + 40798 0.67 0.299632
Target:  5'- cCCCGgCGCCcaaggccacgcgcGUCccgGCCGGCCUguaccugacggCGGCCGg -3'
miRNA:   3'- -GGGCaGUGG-------------CAG---CGGUCGGA-----------GCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 23817 0.68 0.293322
Target:  5'- gUCCGcagCACCGaaGUCagcgagAGCCUCGGCCc -3'
miRNA:   3'- -GGGCa--GUGGCagCGG------UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 18486 0.68 0.293322
Target:  5'- cCCUGUCgGCCaGUCGCUucGCCUCGGg-- -3'
miRNA:   3'- -GGGCAG-UGG-CAGCGGu-CGGAGCCggc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.