miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11517 5' -56.8 NC_003085.1 + 9603 0.66 0.591162
Target:  5'- gGGGuCGCUgGUGCuugGCGAAGuuGCGGAu -3'
miRNA:   3'- -UUCuGCGA-CGCG---CGCUUCuuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 27863 0.66 0.584534
Target:  5'- -cGACGCgcgggugagcaucaGCGCGCuGAAGAGGuUGGAc -3'
miRNA:   3'- uuCUGCGa-------------CGCGCG-CUUCUUC-GCCUc -5'
11517 5' -56.8 NC_003085.1 + 12419 0.66 0.580123
Target:  5'- cGGGGcCGCUGCGCucCGAGGAGGCu--- -3'
miRNA:   3'- -UUCU-GCGACGCGc-GCUUCUUCGccuc -5'
11517 5' -56.8 NC_003085.1 + 48505 0.66 0.570225
Target:  5'- uGAG-CGCUGCGaccuccuucucggcgGCGAGGgcGCGGGc -3'
miRNA:   3'- -UUCuGCGACGCg--------------CGCUUCuuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 31895 0.66 0.558186
Target:  5'- -cGAUGCcGUGCG-GAAcGAGGCGGAc -3'
miRNA:   3'- uuCUGCGaCGCGCgCUU-CUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 13562 0.66 0.558186
Target:  5'- cGAGGCGagcaagGCGCGCGuGGAcGUGGGc -3'
miRNA:   3'- -UUCUGCga----CGCGCGCuUCUuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 39667 0.66 0.558186
Target:  5'- -cGGCGC-GCGCGUGAgcagcagcAGgcGCuGGAGg -3'
miRNA:   3'- uuCUGCGaCGCGCGCU--------UCuuCG-CCUC- -5'
11517 5' -56.8 NC_003085.1 + 49004 0.66 0.547304
Target:  5'- --cGCGCUGCccuCGCGGAGAuuggcgaacGGCGcGAGg -3'
miRNA:   3'- uucUGCGACGc--GCGCUUCU---------UCGC-CUC- -5'
11517 5' -56.8 NC_003085.1 + 45886 0.66 0.53649
Target:  5'- aGGGACGCUGCacugGUGgcGAGGuUGGAGg -3'
miRNA:   3'- -UUCUGCGACGcg--CGCuuCUUC-GCCUC- -5'
11517 5' -56.8 NC_003085.1 + 31001 0.66 0.53649
Target:  5'- gAAGACGCUcgacccaacaaGCGcCGUGAgGGAAGgGGAa -3'
miRNA:   3'- -UUCUGCGA-----------CGC-GCGCU-UCUUCgCCUc -5'
11517 5' -56.8 NC_003085.1 + 39545 0.67 0.525751
Target:  5'- -cGACGC-GCaCGuCGGcaGGggGCGGAGg -3'
miRNA:   3'- uuCUGCGaCGcGC-GCU--UCuuCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 40361 0.67 0.525751
Target:  5'- -cGACGCUGCccaggccgGCGCaGAcgagguuguagGGggGCGGGa -3'
miRNA:   3'- uuCUGCGACG--------CGCG-CU-----------UCuuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 11424 0.67 0.525751
Target:  5'- cGGugGCUGCuucuacggcccGUGC-AAGGAGUGGGGc -3'
miRNA:   3'- uUCugCGACG-----------CGCGcUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 17020 0.67 0.524682
Target:  5'- gAAGAUGCcuucccagGUGUGCGggGccuugcccuccacGGGCGGGGg -3'
miRNA:   3'- -UUCUGCGa-------CGCGCGCuuC-------------UUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 17666 0.67 0.519347
Target:  5'- gGAGGCGCUG-GCGCuGAGAccgacgacgcggccaGGCaGGAGc -3'
miRNA:   3'- -UUCUGCGACgCGCGcUUCU---------------UCG-CCUC- -5'
11517 5' -56.8 NC_003085.1 + 29396 0.67 0.504527
Target:  5'- gGAGuuGCUGCgccaGCGCGGccAGcccauGGCGGAGg -3'
miRNA:   3'- -UUCugCGACG----CGCGCU--UCu----UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 34933 0.67 0.504527
Target:  5'- cAGGCGCacGCG-GCGGAGuugcuggccGGCGGAGg -3'
miRNA:   3'- uUCUGCGa-CGCgCGCUUCu--------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 33338 0.67 0.503475
Target:  5'- cAGGuACGCUcGCGCGCGAGGAcugaauacugccgGGCucaacggcucauGGAGc -3'
miRNA:   3'- -UUC-UGCGA-CGCGCGCUUCU-------------UCG------------CCUC- -5'
11517 5' -56.8 NC_003085.1 + 20444 0.67 0.494054
Target:  5'- gGAGAugucCGCcGCGCGCGAgccgcuggAGAAGUGGc- -3'
miRNA:   3'- -UUCU----GCGaCGCGCGCU--------UCUUCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 43418 0.67 0.494054
Target:  5'- -cGACGCcGCGaaggGCGggGAGGUacgagaGGAGg -3'
miRNA:   3'- uuCUGCGaCGCg---CGCuuCUUCG------CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.