Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 9603 | 0.66 | 0.591162 |
Target: 5'- gGGGuCGCUgGUGCuugGCGAAGuuGCGGAu -3' miRNA: 3'- -UUCuGCGA-CGCG---CGCUUCuuCGCCUc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 49316 | 0.69 | 0.372153 |
Target: 5'- aGAGACGgaGCGgGCaGuggaagaggcgccucGAGAAGUGGAGg -3' miRNA: 3'- -UUCUGCgaCGCgCG-C---------------UUCUUCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 43418 | 0.67 | 0.494054 |
Target: 5'- -cGACGCcGCGaaggGCGggGAGGUacgagaGGAGg -3' miRNA: 3'- uuCUGCGaCGCg---CGCuuCUUCG------CCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 33338 | 0.67 | 0.503475 |
Target: 5'- cAGGuACGCUcGCGCGCGAGGAcugaauacugccgGGCucaacggcucauGGAGc -3' miRNA: 3'- -UUC-UGCGA-CGCGCGCUUCU-------------UCG------------CCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 40361 | 0.67 | 0.525751 |
Target: 5'- -cGACGCUGCccaggccgGCGCaGAcgagguuguagGGggGCGGGa -3' miRNA: 3'- uuCUGCGACG--------CGCG-CU-----------UCuuCGCCUc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 39545 | 0.67 | 0.525751 |
Target: 5'- -cGACGC-GCaCGuCGGcaGGggGCGGAGg -3' miRNA: 3'- uuCUGCGaCGcGC-GCU--UCuuCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 10857 | 0.7 | 0.326545 |
Target: 5'- ---cCGCUGCGCG-GAAGAGGUGGc- -3' miRNA: 3'- uucuGCGACGCGCgCUUCUUCGCCuc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 19046 | 0.69 | 0.383761 |
Target: 5'- gAAGGCGUUGCuGCGC-AGGAagcgcgccaccgucGGCGGGGc -3' miRNA: 3'- -UUCUGCGACG-CGCGcUUCU--------------UCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 17020 | 0.67 | 0.524682 |
Target: 5'- gAAGAUGCcuucccagGUGUGCGggGccuugcccuccacGGGCGGGGg -3' miRNA: 3'- -UUCUGCGa-------CGCGCGCuuC-------------UUCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 45886 | 0.66 | 0.53649 |
Target: 5'- aGGGACGCUGCacugGUGgcGAGGuUGGAGg -3' miRNA: 3'- -UUCUGCGACGcg--CGCuuCUUC-GCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 27863 | 0.66 | 0.584534 |
Target: 5'- -cGACGCgcgggugagcaucaGCGCGCuGAAGAGGuUGGAc -3' miRNA: 3'- uuCUGCGa-------------CGCGCG-CUUCUUC-GCCUc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 43341 | 0.71 | 0.310737 |
Target: 5'- cGGACacacucCUGCGCGUGGAGuccgaGGGCGGGGa -3' miRNA: 3'- uUCUGc-----GACGCGCGCUUC-----UUCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 49004 | 0.66 | 0.547304 |
Target: 5'- --cGCGCUGCccuCGCGGAGAuuggcgaacGGCGcGAGg -3' miRNA: 3'- uucUGCGACGc--GCGCUUCU---------UCGC-CUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 4158 | 0.69 | 0.403945 |
Target: 5'- -cGGCGagUGCGgGCGcuccaccAGGAGGCGGAGc -3' miRNA: 3'- uuCUGCg-ACGCgCGC-------UUCUUCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 20155 | 0.71 | 0.280887 |
Target: 5'- cGGcACGUcacaGCGCGCGuGGAAGCGGAu -3' miRNA: 3'- uUC-UGCGa---CGCGCGCuUCUUCGCCUc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 48315 | 0.7 | 0.359921 |
Target: 5'- -cGGCGCcGCGCuGCuGGAGGAGuUGGAGg -3' miRNA: 3'- uuCUGCGaCGCG-CG-CUUCUUC-GCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 20444 | 0.67 | 0.494054 |
Target: 5'- gGAGAugucCGCcGCGCGCGAgccgcuggAGAAGUGGc- -3' miRNA: 3'- -UUCU----GCGaCGCGCGCU--------UCUUCGCCuc -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 23554 | 0.67 | 0.483681 |
Target: 5'- cAGGGCGCUGCucgGCGCGgcGuuGCgaugucgcuGGAGg -3' miRNA: 3'- -UUCUGCGACG---CGCGCuuCuuCG---------CCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 15616 | 0.67 | 0.473414 |
Target: 5'- --uGCGCUgauugaGCGgGUGggGAgGGCGGAGa -3' miRNA: 3'- uucUGCGA------CGCgCGCuuCU-UCGCCUC- -5' |
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11517 | 5' | -56.8 | NC_003085.1 | + | 25811 | 0.68 | 0.443295 |
Target: 5'- gGAGugGcCUGCcaucaccCGCGcGGAGGUGGAGa -3' miRNA: 3'- -UUCugC-GACGc------GCGCuUCUUCGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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