miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 13814 0.66 0.643132
Target:  5'- -gUgGAGguGGCG-CCAUGacgugcagACGCCGc -3'
miRNA:   3'- gaAgCUCguCCGCuGGUGCa-------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 27468 0.66 0.643132
Target:  5'- uUUCGuGCGGGaGGCCACcu-CGUCGg -3'
miRNA:   3'- gAAGCuCGUCCgCUGGUGcauGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 920 0.66 0.643132
Target:  5'- cCUUCGGGCAGcGCGACgugagagaCGCGcucgACGaCCu -3'
miRNA:   3'- -GAAGCUCGUC-CGCUG--------GUGCa---UGC-GGc -5'
11518 3' -56.7 NC_003085.1 + 30435 0.66 0.643132
Target:  5'- --cCGGGCGGGaugcuaGacGCCGCaGUGCGCCc -3'
miRNA:   3'- gaaGCUCGUCCg-----C--UGGUG-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 10548 0.66 0.63222
Target:  5'- --gCGcAGCAGGuCGGCCAgcCGagggGCGCCa -3'
miRNA:   3'- gaaGC-UCGUCC-GCUGGU--GCa---UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 38325 0.66 0.631129
Target:  5'- -gUCGcgcggaAGUAGGUGGCCaccgccgACGUGCuGCCGu -3'
miRNA:   3'- gaAGC------UCGUCCGCUGG-------UGCAUG-CGGC- -5'
11518 3' -56.7 NC_003085.1 + 41039 0.66 0.621307
Target:  5'- gCUUgCGAGCGcuGGCGggGCCACagggACGCCu -3'
miRNA:   3'- -GAA-GCUCGU--CCGC--UGGUGca--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 25564 0.66 0.621307
Target:  5'- ---aGaAGCAGGCGGgCGCGgacCGCCu -3'
miRNA:   3'- gaagC-UCGUCCGCUgGUGCau-GCGGc -5'
11518 3' -56.7 NC_003085.1 + 15843 0.66 0.621307
Target:  5'- gCUUCGGuGCaAGGCGAUUGaGUugaGCGCCGa -3'
miRNA:   3'- -GAAGCU-CG-UCCGCUGGUgCA---UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 3960 0.66 0.616945
Target:  5'- --aCGAGCAGuGCcACCGCGacagacggcgggcGCGCCGu -3'
miRNA:   3'- gaaGCUCGUC-CGcUGGUGCa------------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 8702 0.66 0.614763
Target:  5'- aCUUCGGGUGGGCcucGACgaaCACGUggcagugcuaccugcGCGCCu -3'
miRNA:   3'- -GAAGCUCGUCCG---CUG---GUGCA---------------UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 16965 0.66 0.610404
Target:  5'- --gCGAGguGGCucaucgcucGGCCuCGUugGCCu -3'
miRNA:   3'- gaaGCUCguCCG---------CUGGuGCAugCGGc -5'
11518 3' -56.7 NC_003085.1 + 33228 0.66 0.610404
Target:  5'- -gUCGGGaacagAGGCG-CCACGUACugGUCGa -3'
miRNA:   3'- gaAGCUCg----UCCGCuGGUGCAUG--CGGC- -5'
11518 3' -56.7 NC_003085.1 + 17380 0.66 0.610404
Target:  5'- --gCGAGCAGGacucguguUGGCgaGCGUAcCGCCGg -3'
miRNA:   3'- gaaGCUCGUCC--------GCUGg-UGCAU-GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 13370 0.66 0.610404
Target:  5'- ---aGAGguGGCuGACCACGUcaagaaguuCGUCGg -3'
miRNA:   3'- gaagCUCguCCG-CUGGUGCAu--------GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 11896 0.66 0.599519
Target:  5'- --cCGAGUucauggccAGGCGcuCCACGUuuGCCGa -3'
miRNA:   3'- gaaGCUCG--------UCCGCu-GGUGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 744 0.66 0.599519
Target:  5'- --gCGGGaCAGGUGGCCGgCG-ACGuCCGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGU-GCaUGC-GGC- -5'
11518 3' -56.7 NC_003085.1 + 20933 0.66 0.599519
Target:  5'- --cUGGGUGGGCGGCaccgcaGCGgcgagcucgGCGCCGg -3'
miRNA:   3'- gaaGCUCGUCCGCUGg-----UGCa--------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36654 0.66 0.598432
Target:  5'- ---aGGGCguauaGGGCGACCuugucucacauagGCGgGCGCCGg -3'
miRNA:   3'- gaagCUCG-----UCCGCUGG-------------UGCaUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 47299 0.66 0.596259
Target:  5'- aCUUCGAcGCcuuGGCGACguUGUccaccaucuccagcGCGCCGc -3'
miRNA:   3'- -GAAGCU-CGu--CCGCUGguGCA--------------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.