Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11518 | 3' | -56.7 | NC_003085.1 | + | 27468 | 0.66 | 0.643132 |
Target: 5'- uUUCGuGCGGGaGGCCACcu-CGUCGg -3' miRNA: 3'- gAAGCuCGUCCgCUGGUGcauGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 16965 | 0.66 | 0.610404 |
Target: 5'- --gCGAGguGGCucaucgcucGGCCuCGUugGCCu -3' miRNA: 3'- gaaGCUCguCCG---------CUGGuGCAugCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 20933 | 0.66 | 0.599519 |
Target: 5'- --cUGGGUGGGCGGCaccgcaGCGgcgagcucgGCGCCGg -3' miRNA: 3'- gaaGCUCGUCCGCUGg-----UGCa--------UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 744 | 0.66 | 0.599519 |
Target: 5'- --gCGGGaCAGGUGGCCGgCG-ACGuCCGg -3' miRNA: 3'- gaaGCUC-GUCCGCUGGU-GCaUGC-GGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 13814 | 0.66 | 0.643132 |
Target: 5'- -gUgGAGguGGCG-CCAUGacgugcagACGCCGc -3' miRNA: 3'- gaAgCUCguCCGCuGGUGCa-------UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 920 | 0.66 | 0.643132 |
Target: 5'- cCUUCGGGCAGcGCGACgugagagaCGCGcucgACGaCCu -3' miRNA: 3'- -GAAGCUCGUC-CGCUG--------GUGCa---UGC-GGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 30435 | 0.66 | 0.643132 |
Target: 5'- --cCGGGCGGGaugcuaGacGCCGCaGUGCGCCc -3' miRNA: 3'- gaaGCUCGUCCg-----C--UGGUG-CAUGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 38325 | 0.66 | 0.631129 |
Target: 5'- -gUCGcgcggaAGUAGGUGGCCaccgccgACGUGCuGCCGu -3' miRNA: 3'- gaAGC------UCGUCCGCUGG-------UGCAUG-CGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 41039 | 0.66 | 0.621307 |
Target: 5'- gCUUgCGAGCGcuGGCGggGCCACagggACGCCu -3' miRNA: 3'- -GAA-GCUCGU--CCGC--UGGUGca--UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 15843 | 0.66 | 0.621307 |
Target: 5'- gCUUCGGuGCaAGGCGAUUGaGUugaGCGCCGa -3' miRNA: 3'- -GAAGCU-CG-UCCGCUGGUgCA---UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 25564 | 0.66 | 0.621307 |
Target: 5'- ---aGaAGCAGGCGGgCGCGgacCGCCu -3' miRNA: 3'- gaagC-UCGUCCGCUgGUGCau-GCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 33228 | 0.66 | 0.610404 |
Target: 5'- -gUCGGGaacagAGGCG-CCACGUACugGUCGa -3' miRNA: 3'- gaAGCUCg----UCCGCuGGUGCAUG--CGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 10548 | 0.66 | 0.63222 |
Target: 5'- --gCGcAGCAGGuCGGCCAgcCGagggGCGCCa -3' miRNA: 3'- gaaGC-UCGUCC-GCUGGU--GCa---UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 47299 | 0.66 | 0.596259 |
Target: 5'- aCUUCGAcGCcuuGGCGACguUGUccaccaucuccagcGCGCCGc -3' miRNA: 3'- -GAAGCU-CGu--CCGCUGguGCA--------------UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 11896 | 0.66 | 0.599519 |
Target: 5'- --cCGAGUucauggccAGGCGcuCCACGUuuGCCGa -3' miRNA: 3'- gaaGCUCG--------UCCGCu-GGUGCAugCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 17380 | 0.66 | 0.610404 |
Target: 5'- --gCGAGCAGGacucguguUGGCgaGCGUAcCGCCGg -3' miRNA: 3'- gaaGCUCGUCC--------GCUGg-UGCAU-GCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 13370 | 0.66 | 0.610404 |
Target: 5'- ---aGAGguGGCuGACCACGUcaagaaguuCGUCGg -3' miRNA: 3'- gaagCUCguCCG-CUGGUGCAu--------GCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 36654 | 0.66 | 0.598432 |
Target: 5'- ---aGGGCguauaGGGCGACCuugucucacauagGCGgGCGCCGg -3' miRNA: 3'- gaagCUCG-----UCCGCUGG-------------UGCaUGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 8702 | 0.66 | 0.614763 |
Target: 5'- aCUUCGGGUGGGCcucGACgaaCACGUggcagugcuaccugcGCGCCu -3' miRNA: 3'- -GAAGCUCGUCCG---CUG---GUGCA---------------UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 3960 | 0.66 | 0.616945 |
Target: 5'- --aCGAGCAGuGCcACCGCGacagacggcgggcGCGCCGu -3' miRNA: 3'- gaaGCUCGUC-CGcUGGUGCa------------UGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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