miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 33013 0.66 0.647123
Target:  5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 46731 0.68 0.541664
Target:  5'- gGCgGCGaaGCGCCUCGGcaucACUGGcAacacgucugcccggcAGCCg -3'
miRNA:   3'- aCGaCGC--UGCGGAGCU----UGACC-U---------------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30331 0.68 0.537363
Target:  5'- cGcCUGgGGCGgCggGGGCUGGgcGCCg -3'
miRNA:   3'- aC-GACgCUGCgGagCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 22189 0.8 0.100263
Target:  5'- cUGCUGCGGCGCCgggCucuGCUGGGcGGCCu -3'
miRNA:   3'- -ACGACGCUGCGGa--Gcu-UGACCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39499 0.66 0.63605
Target:  5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3'
miRNA:   3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 37071 0.66 0.63605
Target:  5'- cGCUGgGGCGCCagcagUGcccuGCUGGAGucgaagcggcGCCa -3'
miRNA:   3'- aCGACgCUGCGGa----GCu---UGACCUU----------CGG- -5'
11520 5' -55.8 NC_003085.1 + 18033 0.67 0.613904
Target:  5'- cGCUGcCGGCGCUUC-AGgUGGccccagcaGAGCCc -3'
miRNA:   3'- aCGAC-GCUGCGGAGcUUgACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 22903 0.67 0.613904
Target:  5'- cGCUGcCGACGUggcaaUCGGAgUcGggGCCg -3'
miRNA:   3'- aCGAC-GCUGCGg----AGCUUgAcCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43732 0.67 0.591821
Target:  5'- cGCUGCaacccCGCCcccCGGgcuGCUGGAGGCg -3'
miRNA:   3'- aCGACGcu---GCGGa--GCU---UGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 16521 0.68 0.548136
Target:  5'- -aCUGcCGuCGCCUCGAAugacgucggcgcCUGGAuauggGGCCa -3'
miRNA:   3'- acGAC-GCuGCGGAGCUU------------GACCU-----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 47326 0.67 0.580827
Target:  5'- gGCggacgGUGACGCCU-GAGCacaacgccauggUGGAuGCCa -3'
miRNA:   3'- aCGa----CGCUGCGGAgCUUG------------ACCUuCGG- -5'
11520 5' -55.8 NC_003085.1 + 30226 0.67 0.60285
Target:  5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3'
miRNA:   3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 47613 0.66 0.647123
Target:  5'- cGCUGCGcauCGCUcgCGGGCUcgucggucccGGuGGCCg -3'
miRNA:   3'- aCGACGCu--GCGGa-GCUUGA----------CCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 18565 0.67 0.569876
Target:  5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3'
miRNA:   3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 28364 0.66 0.647123
Target:  5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3'
miRNA:   3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43272 0.67 0.60948
Target:  5'- cGCUGCacgagGACGCCgcgaaguaccgcgCGGcgguggagcgACUGGAgcaGGCCg -3'
miRNA:   3'- aCGACG-----CUGCGGa------------GCU----------UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 29344 0.68 0.548136
Target:  5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3'
miRNA:   3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39071 0.68 0.537363
Target:  5'- ---cGCGACGUagcgggCUCGAAuCUGcGggGCCg -3'
miRNA:   3'- acgaCGCUGCG------GAGCUU-GAC-CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 48511 0.66 0.647123
Target:  5'- aUGCUcGCGGCcucGCCguccaugCGGA--GGAAGCCa -3'
miRNA:   3'- -ACGA-CGCUG---CGGa------GCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 21486 0.66 0.624974
Target:  5'- -uCUGCG-CgGCCUCGGACagcaGGcGGCCg -3'
miRNA:   3'- acGACGCuG-CGGAGCUUGa---CCuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.