miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11524 5' -54.3 NC_003085.1 + 8215 0.66 0.723174
Target:  5'- cGCCUgaugCGC-GGcGCUugAGCAgGUCCACc -3'
miRNA:   3'- -CGGGa---GCGuUCaCGA--UCGUgUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 42087 0.66 0.723174
Target:  5'- cGCCCUCGUccGUGCcgaCGCcgCCGg -3'
miRNA:   3'- -CGGGAGCGuuCACGaucGUGuaGGUg -5'
11524 5' -54.3 NC_003085.1 + 43260 0.66 0.712189
Target:  5'- cGCCCUcggacuccacgCGCAGgaguguguccGUGCUgggcauggAGCACAggUCCACc -3'
miRNA:   3'- -CGGGA-----------GCGUU----------CACGA--------UCGUGU--AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 32212 0.66 0.712189
Target:  5'- cGCCCUgCGCAAcaccGCccagAGCACGgggcgCCGCg -3'
miRNA:   3'- -CGGGA-GCGUUca--CGa---UCGUGUa----GGUG- -5'
11524 5' -54.3 NC_003085.1 + 40373 0.66 0.701121
Target:  5'- uGCCCgcggCGCugacgccucuGGcGCUGGCcgGCAUCCAa -3'
miRNA:   3'- -CGGGa---GCGu---------UCaCGAUCG--UGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 38291 0.66 0.701121
Target:  5'- uGCCgUCGaGAGUGCacgAGCcACcgCCGCc -3'
miRNA:   3'- -CGGgAGCgUUCACGa--UCG-UGuaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 13668 0.66 0.694445
Target:  5'- uGCCUUgGCGucauggcgcgccuccGGUGCc--CACGUCCACg -3'
miRNA:   3'- -CGGGAgCGU---------------UCACGaucGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 42623 0.66 0.689982
Target:  5'- aGCCCUCGCccgcGcGCUGGCcgaggcgaaGCGggaggCCACg -3'
miRNA:   3'- -CGGGAGCGuu--CaCGAUCG---------UGUa----GGUG- -5'
11524 5' -54.3 NC_003085.1 + 13932 0.66 0.689982
Target:  5'- uGCCgggCGCGGGuUGCc-GCACAUCCGg -3'
miRNA:   3'- -CGGga-GCGUUC-ACGauCGUGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 28786 0.66 0.678784
Target:  5'- aGCCgaagCGCAGG-GCcAGCGCGcagcUCCGCg -3'
miRNA:   3'- -CGGga--GCGUUCaCGaUCGUGU----AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 21644 0.67 0.667539
Target:  5'- uGCCCgUCaccuGGUGC-AGgGCGUCCACg -3'
miRNA:   3'- -CGGG-AGcgu-UCACGaUCgUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 20943 0.67 0.65626
Target:  5'- aGCCCcgCGCGcgucugcacgaGGUGCggUGGCugGccuUCCGCa -3'
miRNA:   3'- -CGGGa-GCGU-----------UCACG--AUCGugU---AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 14427 0.67 0.65626
Target:  5'- uGCUC-CGCGAGgGCUGGC-CcUCUACg -3'
miRNA:   3'- -CGGGaGCGUUCaCGAUCGuGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 36230 0.67 0.65626
Target:  5'- -gCCUCGuCAGGUcGCUGGC-CAUUCGg -3'
miRNA:   3'- cgGGAGC-GUUCA-CGAUCGuGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 27911 0.67 0.644956
Target:  5'- gGCCCUCGCGGGccGCgcGUGguUCCGg -3'
miRNA:   3'- -CGGGAGCGUUCa-CGauCGUguAGGUg -5'
11524 5' -54.3 NC_003085.1 + 38142 0.67 0.644956
Target:  5'- cGCCCUgcuggCGUuGGUGgUGGCGCuccccgCCGCg -3'
miRNA:   3'- -CGGGA-----GCGuUCACgAUCGUGua----GGUG- -5'
11524 5' -54.3 NC_003085.1 + 30362 0.67 0.633641
Target:  5'- cGUCCUCaaaacCGAGUGCggcauuCACGUCCGCc -3'
miRNA:   3'- -CGGGAGc----GUUCACGauc---GUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 30438 0.67 0.622324
Target:  5'- gGCCCggGCGGGaUGCUAG-ACG-CCGCa -3'
miRNA:   3'- -CGGGagCGUUC-ACGAUCgUGUaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 29399 0.67 0.622324
Target:  5'- uGCCC-CGCGgcGGUGCccuguccaaUAGCGCuggCCAUg -3'
miRNA:   3'- -CGGGaGCGU--UCACG---------AUCGUGua-GGUG- -5'
11524 5' -54.3 NC_003085.1 + 9080 0.67 0.621192
Target:  5'- gGCCC-CaGCAAGUGCggcuccaUGGCccuCGUCUACg -3'
miRNA:   3'- -CGGGaG-CGUUCACG-------AUCGu--GUAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.