miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11538 3' -52.3 NC_003085.1 + 31443 0.66 0.815856
Target:  5'- -uACACGGAUG--GCACGUacgGCCuCGCg -3'
miRNA:   3'- uuUGUGCCUAUgaCGUGCG---UGGuGUG- -5'
11538 3' -52.3 NC_003085.1 + 9192 0.66 0.815856
Target:  5'- cGGCGCGGGUACuccUGCGCccuguguuCGCCGCGg -3'
miRNA:   3'- uUUGUGCCUAUG---ACGUGc-------GUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 31298 0.66 0.805988
Target:  5'- uAAGCGCGGGcag-GCGCGC-CCgACACc -3'
miRNA:   3'- -UUUGUGCCUaugaCGUGCGuGG-UGUG- -5'
11538 3' -52.3 NC_003085.1 + 30326 0.66 0.805988
Target:  5'- gGGGCgGCGGggGCUGg--GCGCCGCGCa -3'
miRNA:   3'- -UUUG-UGCCuaUGACgugCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 11595 0.66 0.805988
Target:  5'- cGAACGCGcg-GCcgGUAacCGCACCACACc -3'
miRNA:   3'- -UUUGUGCcuaUGa-CGU--GCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 17236 0.66 0.795921
Target:  5'- --uCGCuGcgACU-CGCGCACCGCGCa -3'
miRNA:   3'- uuuGUGcCuaUGAcGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 20958 0.66 0.795921
Target:  5'- -uGCACGaGGUGCggugGCugGCcuuCCGCAa -3'
miRNA:   3'- uuUGUGC-CUAUGa---CGugCGu--GGUGUg -5'
11538 3' -52.3 NC_003085.1 + 11758 0.66 0.795921
Target:  5'- uGACACGcgucuacgacGGUACgGCG-GCGCCGCGCu -3'
miRNA:   3'- uUUGUGC----------CUAUGaCGUgCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 15636 0.66 0.795921
Target:  5'- gGAGgGCGGAgaaGgaGCGCGaCGCCACGu -3'
miRNA:   3'- -UUUgUGCCUa--UgaCGUGC-GUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 43137 0.66 0.785666
Target:  5'- aGAGCGCGcccAUGCUGCGCGguUCcCGCu -3'
miRNA:   3'- -UUUGUGCc--UAUGACGUGCguGGuGUG- -5'
11538 3' -52.3 NC_003085.1 + 49041 0.66 0.785666
Target:  5'- cAGCGCGGAgAUgaagGCGCGCggGCCGgACc -3'
miRNA:   3'- uUUGUGCCUaUGa---CGUGCG--UGGUgUG- -5'
11538 3' -52.3 NC_003085.1 + 786 0.66 0.785666
Target:  5'- gAGGCGCGGGUGgacCUGCucaggcCGCGCCcgaggccggACGCg -3'
miRNA:   3'- -UUUGUGCCUAU---GACGu-----GCGUGG---------UGUG- -5'
11538 3' -52.3 NC_003085.1 + 14267 0.66 0.775236
Target:  5'- gAGACguGCGGccagGCUGCugccgucaaGCGCCGCGCa -3'
miRNA:   3'- -UUUG--UGCCua--UGACGug-------CGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 37300 0.67 0.764644
Target:  5'- uGAGCGCGGcgGCUGgGC-CGCCAgAa -3'
miRNA:   3'- -UUUGUGCCuaUGACgUGcGUGGUgUg -5'
11538 3' -52.3 NC_003085.1 + 7342 0.67 0.764644
Target:  5'- aGGACGCGG--GCUaCACGCGCCccuggGCGCc -3'
miRNA:   3'- -UUUGUGCCuaUGAcGUGCGUGG-----UGUG- -5'
11538 3' -52.3 NC_003085.1 + 17993 0.67 0.764644
Target:  5'- aGGGCACGGA-GCUGCGagaGCGCggaCugGCg -3'
miRNA:   3'- -UUUGUGCCUaUGACGUg--CGUG---GugUG- -5'
11538 3' -52.3 NC_003085.1 + 10569 0.67 0.764644
Target:  5'- --cCGCGGAUuCUcCAgUGCGCCGCGCa -3'
miRNA:   3'- uuuGUGCCUAuGAcGU-GCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 43628 0.67 0.758216
Target:  5'- uGACGCGGGccuaucucgcgcaaGCUGgACGCGCCGCc- -3'
miRNA:   3'- uUUGUGCCUa-------------UGACgUGCGUGGUGug -5'
11538 3' -52.3 NC_003085.1 + 8126 0.67 0.743025
Target:  5'- uGAugACGuGGUGgacCUGCucaaGCGCCGCGCa -3'
miRNA:   3'- -UUugUGC-CUAU---GACGug--CGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 37510 0.67 0.743025
Target:  5'- cGGGCGCGGGguugGC-GCuCGCuaGCCGCACu -3'
miRNA:   3'- -UUUGUGCCUa---UGaCGuGCG--UGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.