miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 5' -65.2 NC_003085.1 + 19772 0.66 0.220074
Target:  5'- aGGUgCAGaugccGCCGCGcGCcuCCAGGGCCGc -3'
miRNA:   3'- gCCGgGUU-----CGGCGU-CG--GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 16648 0.66 0.220074
Target:  5'- -aGCCCGGGUcguCGCAGUggCCGGGcGCCAc -3'
miRNA:   3'- gcCGGGUUCG---GCGUCG--GGUCC-CGGUu -5'
11544 5' -65.2 NC_003085.1 + 29251 0.66 0.214536
Target:  5'- aGGCCUA--CCGCAacGCCCAGuccgaauucGGCCAGc -3'
miRNA:   3'- gCCGGGUucGGCGU--CGGGUC---------CCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 17274 0.66 0.209119
Target:  5'- aGcGCCCAGGCCucgGUGGCCCGGGacucgucucccGUCAGg -3'
miRNA:   3'- gC-CGGGUUCGG---CGUCGGGUCC-----------CGGUU- -5'
11544 5' -65.2 NC_003085.1 + 37231 0.66 0.209118
Target:  5'- gCGGCCCAGccGCCGC-GCUCAaGGCa-- -3'
miRNA:   3'- -GCCGGGUU--CGGCGuCGGGUcCCGguu -5'
11544 5' -65.2 NC_003085.1 + 36410 0.66 0.203819
Target:  5'- -uGCCCAAGCCGUuccuGUUCgAGGGCuCAAc -3'
miRNA:   3'- gcCGGGUUCGGCGu---CGGG-UCCCG-GUU- -5'
11544 5' -65.2 NC_003085.1 + 44324 0.66 0.203819
Target:  5'- cCGaGUCCGAGCgcgaCGCGGCCCGGcaggaagcGGCCu- -3'
miRNA:   3'- -GC-CGGGUUCG----GCGUCGGGUC--------CCGGuu -5'
11544 5' -65.2 NC_003085.1 + 43494 0.66 0.202252
Target:  5'- aCGGCCCcaccGCCuccaGCAGCCCGgcguggacgggaacGGcGCCGAa -3'
miRNA:   3'- -GCCGGGuu--CGG----CGUCGGGU--------------CC-CGGUU- -5'
11544 5' -65.2 NC_003085.1 + 9078 0.66 0.198637
Target:  5'- uCGGCCCcAGCaaguGCGGCuCCAuGGCCc- -3'
miRNA:   3'- -GCCGGGuUCGg---CGUCG-GGUcCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 19347 0.66 0.193569
Target:  5'- aGGCCC-GGCaGguGCCUAaGGCCAu -3'
miRNA:   3'- gCCGGGuUCGgCguCGGGUcCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 20082 0.67 0.190583
Target:  5'- aGG-CUGAGuuGCGGCCCcacgacgacggcggcAGGGCCGu -3'
miRNA:   3'- gCCgGGUUCggCGUCGGG---------------UCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 48978 0.67 0.183773
Target:  5'- aCGGCgCgAGGCggCGCGGCUgGcGGGCCAAu -3'
miRNA:   3'- -GCCG-GgUUCG--GCGUCGGgU-CCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 28803 0.67 0.183773
Target:  5'- cCGGUgCGucucacggaAGCCGaAGCgCAGGGCCAGc -3'
miRNA:   3'- -GCCGgGU---------UCGGCgUCGgGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 44072 0.67 0.180921
Target:  5'- aGGCCCGagugcgggaguuggaGGCggacaaCGCGGCgUGGGGCCGGg -3'
miRNA:   3'- gCCGGGU---------------UCG------GCGUCGgGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 8965 0.67 0.179042
Target:  5'- gGGCCaagGGCCGCGGCCCGcggacuucaccGGCCc- -3'
miRNA:   3'- gCCGGgu-UCGGCGUCGGGUc----------CCGGuu -5'
11544 5' -65.2 NC_003085.1 + 38489 0.67 0.173052
Target:  5'- uGGUgccgaaaacgcgaaCCAucguGCCGguGCCCguacuGGGGCCAAa -3'
miRNA:   3'- gCCG--------------GGUu---CGGCguCGGG-----UCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 30065 0.67 0.171696
Target:  5'- aGGCCCAGGCCGgcauggaggacuugcUGGCUCAGaaggacgccGGCCGc -3'
miRNA:   3'- gCCGGGUUCGGC---------------GUCGGGUC---------CCGGUu -5'
11544 5' -65.2 NC_003085.1 + 15271 0.67 0.168125
Target:  5'- gCGGCCgAGcucacccGCCGCgcccgcgucaugcuGGCCCGGGGCg-- -3'
miRNA:   3'- -GCCGGgUU-------CGGCG--------------UCGGGUCCCGguu -5'
11544 5' -65.2 NC_003085.1 + 11525 0.67 0.16549
Target:  5'- gCGGUuaCC-GGCCGCgcguucgucgAGCgCCGGGGCCAu -3'
miRNA:   3'- -GCCG--GGuUCGGCG----------UCG-GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 865 0.68 0.156974
Target:  5'- -cGUCCA--CCGUGGCCUGGGGCCAc -3'
miRNA:   3'- gcCGGGUucGGCGUCGGGUCCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.