miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11547 5' -54.9 NC_003085.1 + 38864 0.66 0.727148
Target:  5'- gAGCGAc-AGcGCagCGACGAGGgCGAGCg -3'
miRNA:   3'- gUUGCUcuUC-CG--GUUGCUCCgGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 9390 0.66 0.727148
Target:  5'- --uUGAGuaccGGCCAGCGcGGCuaaaggCGAGCa -3'
miRNA:   3'- guuGCUCuu--CCGGUUGCuCCG------GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 2902 0.66 0.727148
Target:  5'- --uCGGGAAGGaCCucuACGGGGCCccAGUc -3'
miRNA:   3'- guuGCUCUUCC-GGu--UGCUCCGGc-UCG- -5'
11547 5' -54.9 NC_003085.1 + 3376 0.66 0.727148
Target:  5'- cCAAUGAGAccuGGGCUGugGcGaCUGAGCg -3'
miRNA:   3'- -GUUGCUCU---UCCGGUugCuCcGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 25043 0.66 0.727148
Target:  5'- -cGCGcGAAGGaCCcgguguucGGCGcGGCCGAGUu -3'
miRNA:   3'- guUGCuCUUCC-GG--------UUGCuCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 33209 0.66 0.727148
Target:  5'- aGGCGuu--GGCCGAgGcacucGGCCGGGCu -3'
miRNA:   3'- gUUGCucuuCCGGUUgCu----CCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 35973 0.66 0.727148
Target:  5'- -cGCGuAGggGGCC----AGGCCGAcGCc -3'
miRNA:   3'- guUGC-UCuuCCGGuugcUCCGGCU-CG- -5'
11547 5' -54.9 NC_003085.1 + 41923 0.66 0.727148
Target:  5'- -cGCGAGguGGaCCAGC---GCCGGGCg -3'
miRNA:   3'- guUGCUCuuCC-GGUUGcucCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 16972 0.66 0.7164
Target:  5'- -cACGAGAugacgcuccGGGCCcGCGAcGCCGAc- -3'
miRNA:   3'- guUGCUCU---------UCCGGuUGCUcCGGCUcg -5'
11547 5' -54.9 NC_003085.1 + 48787 0.66 0.7164
Target:  5'- aGGCGAGAGGuGCUggugGGCGAGuccgccacGCCGcGCa -3'
miRNA:   3'- gUUGCUCUUC-CGG----UUGCUC--------CGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 26681 0.66 0.705568
Target:  5'- aGACGAGGAGGCgAcgguCGAaGaaGAGCg -3'
miRNA:   3'- gUUGCUCUUCCGgUu---GCUcCggCUCG- -5'
11547 5' -54.9 NC_003085.1 + 3658 0.66 0.694663
Target:  5'- aGACG-GAGuGGCaCGACGAGGUugaccuCGAGUu -3'
miRNA:   3'- gUUGCuCUU-CCG-GUUGCUCCG------GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 48417 0.66 0.691379
Target:  5'- uCGGCGGcGcuGGCUuccuccgcauggacGGCGAGGCCgcGAGCa -3'
miRNA:   3'- -GUUGCU-CuuCCGG--------------UUGCUCCGG--CUCG- -5'
11547 5' -54.9 NC_003085.1 + 4173 0.66 0.683696
Target:  5'- -cGCGAGAcAGGUgu-UGAGGUgGAGCa -3'
miRNA:   3'- guUGCUCU-UCCGguuGCUCCGgCUCG- -5'
11547 5' -54.9 NC_003085.1 + 36952 0.66 0.683696
Target:  5'- uCGACaGGcAGGGCC-GCGGGGCCauguuGGCg -3'
miRNA:   3'- -GUUGcUC-UUCCGGuUGCUCCGGc----UCG- -5'
11547 5' -54.9 NC_003085.1 + 818 0.67 0.677091
Target:  5'- gCGACGAacuccggcaaccagcGGAGGCgAcUGAGGCgCGGGUg -3'
miRNA:   3'- -GUUGCU---------------CUUCCGgUuGCUCCG-GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 42796 0.67 0.666049
Target:  5'- uGACGGGAGGGUCGaaugugaugucuugcACGGGuCCG-GCg -3'
miRNA:   3'- gUUGCUCUUCCGGU---------------UGCUCcGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 29236 0.67 0.661623
Target:  5'- uCAGCGA--GGG-CAGCGAGGCCuaccGCa -3'
miRNA:   3'- -GUUGCUcuUCCgGUUGCUCCGGcu--CG- -5'
11547 5' -54.9 NC_003085.1 + 31825 0.67 0.650539
Target:  5'- --cCGAGGAGcGCgCAGCGAaGGuuGaAGCa -3'
miRNA:   3'- guuGCUCUUC-CG-GUUGCU-CCggC-UCG- -5'
11547 5' -54.9 NC_003085.1 + 43071 0.67 0.650539
Target:  5'- gCGugGAGAcacGGCCGAgGAagaaacgaccGGCCGccAGCa -3'
miRNA:   3'- -GUugCUCUu--CCGGUUgCU----------CCGGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.