miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 48944 0.69 0.231836
Target:  5'- gAGGgcagcGCGCaUCCGguccGGCCCGCG-CGCCu -3'
miRNA:   3'- -UCUac---UGCG-AGGC----CCGGGCGCuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 46747 0.67 0.325705
Target:  5'- cGgcGGCGCUCCaGGCggCgGCGaaGCGCCu -3'
miRNA:   3'- uCuaCUGCGAGGcCCG--GgCGC--UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 44659 0.71 0.174555
Target:  5'- cGGUGccGgGCUuuGGGCCCGUccuggcgGAUGCCa -3'
miRNA:   3'- uCUAC--UgCGAggCCCGGGCG-------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 44275 0.69 0.231836
Target:  5'- uGGGUGGCGCguggUGGGUgCGCGACGg- -3'
miRNA:   3'- -UCUACUGCGag--GCCCGgGCGCUGCgg -5'
11548 5' -61.6 NC_003085.1 + 43731 0.66 0.397846
Target:  5'- ---cGACGCgggacacccgagCCGGGUCCGCcccgguggugGGCGCg -3'
miRNA:   3'- ucuaCUGCGa-----------GGCCCGGGCG----------CUGCGg -5'
11548 5' -61.6 NC_003085.1 + 43644 0.71 0.189149
Target:  5'- ---cGugGCgCCGGGUCgGUGACGCg -3'
miRNA:   3'- ucuaCugCGaGGCCCGGgCGCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 43541 0.66 0.40048
Target:  5'- aAGgcGGCGCgUCCagcuugcgcgagauaGGCCCGCGucaccgacccgGCGCCa -3'
miRNA:   3'- -UCuaCUGCG-AGGc--------------CCGGGCGC-----------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 43029 0.66 0.373807
Target:  5'- cGGAUGAUGCgggaaCCGaGGCgCacaGCaACGCCg -3'
miRNA:   3'- -UCUACUGCGa----GGC-CCG-Gg--CGcUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 42819 0.66 0.408448
Target:  5'- uGGAUGcCGUccaCCGcGCCCGCaucgccccGACGCCc -3'
miRNA:   3'- -UCUACuGCGa--GGCcCGGGCG--------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 42812 0.67 0.35725
Target:  5'- -uGUGAUGUcuugcacgggUCCGGcGCUgGCGGCGCg -3'
miRNA:   3'- ucUACUGCG----------AGGCC-CGGgCGCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 42754 0.7 0.220457
Target:  5'- gAGAcacuUGACGaguaCCGGGCCCGC-ACGgCg -3'
miRNA:   3'- -UCU----ACUGCga--GGCCCGGGCGcUGCgG- -5'
11548 5' -61.6 NC_003085.1 + 42538 0.68 0.303436
Target:  5'- gAGAUGACGC-CaCGGGCCU-CGACa-- -3'
miRNA:   3'- -UCUACUGCGaG-GCCCGGGcGCUGcgg -5'
11548 5' -61.6 NC_003085.1 + 42454 0.7 0.214948
Target:  5'- gGGA--GCGgUCCGugucgaGGCCCGUGGCGUCa -3'
miRNA:   3'- -UCUacUGCgAGGC------CCGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 41920 0.66 0.412021
Target:  5'- gAGGUGGaccaGCgCCGGGCgggacucauggggcgCUuggGCGGCGCCg -3'
miRNA:   3'- -UCUACUg---CGaGGCCCG---------------GG---CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 41430 0.69 0.262453
Target:  5'- uGGGUGACGCggCCcGGCCUGCcguaGAagGCCa -3'
miRNA:   3'- -UCUACUGCGa-GGcCCGGGCG----CUg-CGG- -5'
11548 5' -61.6 NC_003085.1 + 41070 0.67 0.348365
Target:  5'- cGAUGACGaCgccgCUGGGCCagcccuugccgcuUGCGAgCGCUg -3'
miRNA:   3'- uCUACUGC-Ga---GGCCCGG-------------GCGCU-GCGG- -5'
11548 5' -61.6 NC_003085.1 + 40355 0.67 0.31815
Target:  5'- cGGUGG-GCaagCCGcugcuGCCCGCGGCGCUg -3'
miRNA:   3'- uCUACUgCGa--GGCc----CGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 39670 0.67 0.354811
Target:  5'- cGGUG-CGCUCCGcGacgcgcuccagcuuGCCaGUGGCGCCg -3'
miRNA:   3'- uCUACuGCGAGGC-C--------------CGGgCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 39278 0.66 0.408448
Target:  5'- gAGggGGucCGUaCCGGaGCCUGCGuuGCCg -3'
miRNA:   3'- -UCuaCU--GCGaGGCC-CGGGCGCugCGG- -5'
11548 5' -61.6 NC_003085.1 + 39141 0.67 0.324944
Target:  5'- uGGAUGACGC-CCuggcaaaGGGCUa-CGGCGUCg -3'
miRNA:   3'- -UCUACUGCGaGG-------CCCGGgcGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.