miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11556 5' -52.1 NC_003085.1 + 11027 0.66 0.878445
Target:  5'- cUCGUCGACCGCcgagacagGCCcgGACuuguGACGGg -3'
miRNA:   3'- uAGCAGCUGGUGa-------UGGcgUUG----UUGCC- -5'
11556 5' -52.1 NC_003085.1 + 46993 0.66 0.878445
Target:  5'- -gCGcCGaACCugUGCCGCcuGCcGCGGu -3'
miRNA:   3'- uaGCaGC-UGGugAUGGCGu-UGuUGCC- -5'
11556 5' -52.1 NC_003085.1 + 3769 0.66 0.878445
Target:  5'- -aCGUCGcGCUGCgugGCCGCAuccCAACGc -3'
miRNA:   3'- uaGCAGC-UGGUGa--UGGCGUu--GUUGCc -5'
11556 5' -52.1 NC_003085.1 + 31786 0.66 0.878445
Target:  5'- gGUUGggcgaagCGGCC-CgGCCGCucGCGACGGa -3'
miRNA:   3'- -UAGCa------GCUGGuGaUGGCGu-UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 10115 0.66 0.878445
Target:  5'- cGUUGaUgGACCugcucgcagcggACUACCGCGaacugcGCGGCGGg -3'
miRNA:   3'- -UAGC-AgCUGG------------UGAUGGCGU------UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 20498 0.66 0.870471
Target:  5'- aAUCGUCaAgCGgUACCGCGACGagcGCGa -3'
miRNA:   3'- -UAGCAGcUgGUgAUGGCGUUGU---UGCc -5'
11556 5' -52.1 NC_003085.1 + 37041 0.66 0.870471
Target:  5'- -cCGgacacCGGCCugUACCGCGcuggcgccgACGACGu -3'
miRNA:   3'- uaGCa----GCUGGugAUGGCGU---------UGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 21591 0.66 0.870471
Target:  5'- -gCGUCa---GC-GCCGCGACGACGGg -3'
miRNA:   3'- uaGCAGcuggUGaUGGCGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 32992 0.66 0.870471
Target:  5'- --gGUCG-CCGUUGCCGCAuucGCGACGu -3'
miRNA:   3'- uagCAGCuGGUGAUGGCGU---UGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 428 0.66 0.86966
Target:  5'- cGUUGUCGGCgcuCAUcccuUGCCGCccuucuuGGCGGCGGg -3'
miRNA:   3'- -UAGCAGCUG---GUG----AUGGCG-------UUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 37717 0.66 0.862239
Target:  5'- -gCGUCGACUGCUacgacggaACCcCAGCGuCGGg -3'
miRNA:   3'- uaGCAGCUGGUGA--------UGGcGUUGUuGCC- -5'
11556 5' -52.1 NC_003085.1 + 7442 0.66 0.862239
Target:  5'- -cCGUCGGCCuCgUACUGgAGCGGCGc -3'
miRNA:   3'- uaGCAGCUGGuG-AUGGCgUUGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 29674 0.66 0.84503
Target:  5'- uGUCGggCGuCCACc-UCGCGACGugGGa -3'
miRNA:   3'- -UAGCa-GCuGGUGauGGCGUUGUugCC- -5'
11556 5' -52.1 NC_003085.1 + 48710 0.66 0.836069
Target:  5'- --aGUCGGCCugUGgCGCAaggugaagGCAuACGGc -3'
miRNA:   3'- uagCAGCUGGugAUgGCGU--------UGU-UGCC- -5'
11556 5' -52.1 NC_003085.1 + 13395 0.66 0.836069
Target:  5'- uUCGUCGGCCACggacaugACCugGACGugGa -3'
miRNA:   3'- uAGCAGCUGGUGa------UGGcgUUGUugCc -5'
11556 5' -52.1 NC_003085.1 + 25679 0.66 0.836069
Target:  5'- cAUCGUCGuACCGggggACCGgAAUAACGa -3'
miRNA:   3'- -UAGCAGC-UGGUga--UGGCgUUGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 13729 0.67 0.826885
Target:  5'- -cCGUCGAggUCACgcgaaGCCGCc-CAACGGg -3'
miRNA:   3'- uaGCAGCU--GGUGa----UGGCGuuGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 28548 0.67 0.826885
Target:  5'- cGUCGUCGcCUACgACUGCug-GACGGa -3'
miRNA:   3'- -UAGCAGCuGGUGaUGGCGuugUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 28951 0.67 0.817485
Target:  5'- -aCGccugCGACUGCUGCUcgGCAGCGccGCGGa -3'
miRNA:   3'- uaGCa---GCUGGUGAUGG--CGUUGU--UGCC- -5'
11556 5' -52.1 NC_003085.1 + 39084 0.67 0.807882
Target:  5'- -cCGUCG-CCucCU-CCGCGACGuaGCGGg -3'
miRNA:   3'- uaGCAGCuGGu-GAuGGCGUUGU--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.