miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 10575 0.66 0.732616
Target:  5'- gCGAaggagCGGgcGCaGCACGAGGCaGCc -3'
miRNA:   3'- gGCUgua--GCCuuCGgCGUGCUUCG-CG- -5'
11561 3' -54.6 NC_003085.1 + 3684 0.66 0.77384
Target:  5'- cUCGaguuGCGUUGGGAuGCgGcCACGcAGCGCg -3'
miRNA:   3'- -GGC----UGUAGCCUU-CGgC-GUGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 10729 0.66 0.760664
Target:  5'- aCGGCAagCGGAcgcuguugcuguccGGCCaCACG-GGCGCc -3'
miRNA:   3'- gGCUGUa-GCCU--------------UCGGcGUGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 34797 0.66 0.736823
Target:  5'- aCGACGagcgguucagugggCGGGAGCCuucgGCGCuGAccgAGCGCg -3'
miRNA:   3'- gGCUGUa-------------GCCUUCGG----CGUG-CU---UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38620 0.66 0.742058
Target:  5'- gCCGugcuCGUCGGGacgcucaAGCCGCugGGguuuGcCGCc -3'
miRNA:   3'- -GGCu---GUAGCCU-------UCGGCGugCUu---C-GCG- -5'
11561 3' -54.6 NC_003085.1 + 13290 0.66 0.763725
Target:  5'- gCGaACAUCGGAGGCCccaGCG-AGCc- -3'
miRNA:   3'- gGC-UGUAGCCUUCGGcg-UGCuUCGcg -5'
11561 3' -54.6 NC_003085.1 + 7903 0.66 0.743101
Target:  5'- gUGGCGUCGG-GGCgaGCGCGuccugucGGCGUg -3'
miRNA:   3'- gGCUGUAGCCuUCGg-CGUGCu------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 14128 0.66 0.739967
Target:  5'- aCGGCAUcaccgugcugcccgCGGuguacCCGUACGGAGUGCc -3'
miRNA:   3'- gGCUGUA--------------GCCuuc--GGCGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 20005 0.66 0.732616
Target:  5'- gCCGuCGUCGuGggGCCGCAacucagccugGAGGacgGCa -3'
miRNA:   3'- -GGCuGUAGC-CuuCGGCGUg---------CUUCg--CG- -5'
11561 3' -54.6 NC_003085.1 + 370 0.66 0.743101
Target:  5'- gCCGACAaCGGGaggGGCCaGUaccucuACGGcaAGCGCc -3'
miRNA:   3'- -GGCUGUaGCCU---UCGG-CG------UGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 6747 0.66 0.732616
Target:  5'- uCCGACugccCGGccuGCCGCGCcguGGCGg -3'
miRNA:   3'- -GGCUGua--GCCuu-CGGCGUGcu-UCGCg -5'
11561 3' -54.6 NC_003085.1 + 42166 0.66 0.742058
Target:  5'- -gGACAU-GGAcucucccgucgcAGCCagccucgGCAUGAGGCGCu -3'
miRNA:   3'- ggCUGUAgCCU------------UCGG-------CGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 33790 0.66 0.743101
Target:  5'- cCCGACAgagaGGAGGaguucuCCuCGCGggGCaGCa -3'
miRNA:   3'- -GGCUGUag--CCUUC------GGcGUGCuuCG-CG- -5'
11561 3' -54.6 NC_003085.1 + 13076 0.66 0.766774
Target:  5'- gCGACAaggaguugcagcaGGAAcuggcacGCCGCGCuGAGGUGCg -3'
miRNA:   3'- gGCUGUag-----------CCUU-------CGGCGUG-CUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 11770 0.66 0.732616
Target:  5'- aCGACGguacggCGGc-GCCGCGCuccGGGCGUg -3'
miRNA:   3'- gGCUGUa-----GCCuuCGGCGUGc--UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 40778 0.66 0.743101
Target:  5'- gCUGACGUUGGcGGaCgGCACcccGGCGCc -3'
miRNA:   3'- -GGCUGUAGCCuUC-GgCGUGcu-UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 31921 0.66 0.77384
Target:  5'- -aGGCA-CGGGAGCaGCACccGGUGCc -3'
miRNA:   3'- ggCUGUaGCCUUCGgCGUGcuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38057 0.66 0.753475
Target:  5'- cCCGACAUguggUGGugcGUCGCggagACGGcAGCGCa -3'
miRNA:   3'- -GGCUGUA----GCCuu-CGGCG----UGCU-UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 26349 0.66 0.753475
Target:  5'- aCCaGACGggaUGGAA-CCGCACGcAGCGg -3'
miRNA:   3'- -GG-CUGUa--GCCUUcGGCGUGCuUCGCg -5'
11561 3' -54.6 NC_003085.1 + 16999 0.66 0.753475
Target:  5'- gCCGACggCGacGAGaaGCGCGGaugGGCGCu -3'
miRNA:   3'- -GGCUGuaGCc-UUCggCGUGCU---UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.