miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 370 0.66 0.743101
Target:  5'- gCCGACAaCGGGaggGGCCaGUaccucuACGGcaAGCGCc -3'
miRNA:   3'- -GGCUGUaGCCU---UCGG-CG------UGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 544 0.73 0.353833
Target:  5'- uUCGGCAgccagggCGGGguGGCCGU-CGAAGUGCa -3'
miRNA:   3'- -GGCUGUa------GCCU--UCGGCGuGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 809 0.68 0.624086
Target:  5'- uCCGGCAaccagCGGAGGCgac-UGAGGCGCg -3'
miRNA:   3'- -GGCUGUa----GCCUUCGgcguGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 1182 0.67 0.688699
Target:  5'- -gGACAUCGGGAcgggcucGCUGCcGCGGAuGgGCa -3'
miRNA:   3'- ggCUGUAGCCUU-------CGGCG-UGCUU-CgCG- -5'
11561 3' -54.6 NC_003085.1 + 1382 0.67 0.700603
Target:  5'- cCCGACGUCuGGGacgAGgUGUAUGAgAGCGUc -3'
miRNA:   3'- -GGCUGUAG-CCU---UCgGCGUGCU-UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 2349 0.77 0.207992
Target:  5'- gCGACAUcCGGGAGgCGCaguGCGAGGcCGCg -3'
miRNA:   3'- gGCUGUA-GCCUUCgGCG---UGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 2588 0.69 0.590102
Target:  5'- aUCGACGcggucaCGGAAGaCGCugcgcgcgaagaaGCGGAGCGCu -3'
miRNA:   3'- -GGCUGUa-----GCCUUCgGCG-------------UGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 2701 0.67 0.720967
Target:  5'- uCCGgagcGCAUCGGAaagguccAGUCGgGCGAAGaagGCc -3'
miRNA:   3'- -GGC----UGUAGCCU-------UCGGCgUGCUUCg--CG- -5'
11561 3' -54.6 NC_003085.1 + 3179 0.66 0.743101
Target:  5'- gUCGAgCAUCGccucAAGCCGCGCcuuccgcgGGAGCGg -3'
miRNA:   3'- -GGCU-GUAGCc---UUCGGCGUG--------CUUCGCg -5'
11561 3' -54.6 NC_003085.1 + 3271 0.67 0.689784
Target:  5'- gCGGCAUCGGGccagGGCC-CGCGAgaGGaCGg -3'
miRNA:   3'- gGCUGUAGCCU----UCGGcGUGCU--UC-GCg -5'
11561 3' -54.6 NC_003085.1 + 3420 0.67 0.699524
Target:  5'- aCgGGCGUCGGGGagcGUCGUcugugcgGCGAccAGCGCc -3'
miRNA:   3'- -GgCUGUAGCCUU---CGGCG-------UGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3684 0.66 0.77384
Target:  5'- cUCGaguuGCGUUGGGAuGCgGcCACGcAGCGCg -3'
miRNA:   3'- -GGC----UGUAGCCUU-CGgC-GUGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3945 0.66 0.77384
Target:  5'- gCGACAgacggCGGGcgcGCCGU-CGAcGCGCc -3'
miRNA:   3'- gGCUGUa----GCCUu--CGGCGuGCUuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3963 0.69 0.557532
Target:  5'- cCCGGgGaUGGAgccagacGGCCGCGCuugcGAGCGCg -3'
miRNA:   3'- -GGCUgUaGCCU-------UCGGCGUGc---UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 4109 0.67 0.72203
Target:  5'- gCUGGaGUUGGgcGCCGCGCuGGgacuccAGCGCc -3'
miRNA:   3'- -GGCUgUAGCCuuCGGCGUG-CU------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 4333 0.73 0.353833
Target:  5'- gCGACuacuuGAGGCCaagcGCGCGAAGCGCu -3'
miRNA:   3'- gGCUGuagc-CUUCGG----CGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 4376 0.67 0.699524
Target:  5'- aCGACAacuUCGaGAguagacgcguuccGGCaCGCugGgcGCGCa -3'
miRNA:   3'- gGCUGU---AGC-CU-------------UCG-GCGugCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 5142 0.74 0.305824
Target:  5'- cCCGAaga-GGAGGCCGaCGCGAAG-GCa -3'
miRNA:   3'- -GGCUguagCCUUCGGC-GUGCUUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 5511 0.68 0.635076
Target:  5'- gCUGACgcGUCGGcacguGCUcgcacugguGCGCGAAGUGCg -3'
miRNA:   3'- -GGCUG--UAGCCuu---CGG---------CGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 5615 0.67 0.72203
Target:  5'- gUGACGcgguggUGGAcgGGCUGCugG-AGCGCu -3'
miRNA:   3'- gGCUGUa-----GCCU--UCGGCGugCuUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.