miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 23341 0.72 0.416248
Target:  5'- gCCGGCcaagCGccgccGGCCGC-CGAGGCGCa -3'
miRNA:   3'- -GGCUGua--GCcu---UCGGCGuGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 544 0.73 0.353833
Target:  5'- uUCGGCAgccagggCGGGguGGCCGU-CGAAGUGCa -3'
miRNA:   3'- -GGCUGUa------GCCU--UCGGCGuGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 39589 0.73 0.353833
Target:  5'- aCUGGCAagCuGGAGCgCGuCGCGGAGCGCa -3'
miRNA:   3'- -GGCUGUa-GcCUUCG-GC-GUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 49165 0.73 0.362334
Target:  5'- aUGAgGUCGGAGGCCGCcCGGuccuGcCGCc -3'
miRNA:   3'- gGCUgUAGCCUUCGGCGuGCUu---C-GCG- -5'
11561 3' -54.6 NC_003085.1 + 17975 0.73 0.379758
Target:  5'- gCCGGCAgCGcGGGCCGCagggcACGGAGCuGCg -3'
miRNA:   3'- -GGCUGUaGCcUUCGGCG-----UGCUUCG-CG- -5'
11561 3' -54.6 NC_003085.1 + 29103 0.73 0.379758
Target:  5'- cCCGGCGUCaGcAGCgGCgACGcGGCGCg -3'
miRNA:   3'- -GGCUGUAGcCuUCGgCG-UGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 40736 0.72 0.388678
Target:  5'- gCCGGCGcCGGAGGCa-CugGAGGUGUc -3'
miRNA:   3'- -GGCUGUaGCCUUCGgcGugCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 12293 0.72 0.388678
Target:  5'- gCGACGgcgCGGuGGuCCGCugGGuugcGGCGCa -3'
miRNA:   3'- gGCUGUa--GCCuUC-GGCGugCU----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 20930 0.72 0.416248
Target:  5'- -gGACGUCcuauGGAGCCccgcgcgcgucuGCACGAGGUGCg -3'
miRNA:   3'- ggCUGUAGc---CUUCGG------------CGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 7316 0.73 0.337256
Target:  5'- uCCGACGgccaucgCGGAGGCgGC-UGAGGaCGCg -3'
miRNA:   3'- -GGCUGUa------GCCUUCGgCGuGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 14942 0.74 0.321252
Target:  5'- uCCaACucgCGGAA-CUGCGCGAAGCGCu -3'
miRNA:   3'- -GGcUGua-GCCUUcGGCGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 23570 0.74 0.313466
Target:  5'- gCGGCGUUGcGAuGUCGCugGAGGaCGCg -3'
miRNA:   3'- gGCUGUAGC-CUuCGGCGugCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 11291 0.83 0.088219
Target:  5'- cCCGGCuUCGGAAGCgCGCGCu-GGCGCu -3'
miRNA:   3'- -GGCUGuAGCCUUCG-GCGUGcuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 2349 0.77 0.207992
Target:  5'- gCGACAUcCGGGAGgCGCaguGCGAGGcCGCg -3'
miRNA:   3'- gGCUGUA-GCCUUCgGCG---UGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 32166 0.77 0.207992
Target:  5'- aCGGCGUCGGccAGGCUGCGCcagugguGGCGCg -3'
miRNA:   3'- gGCUGUAGCC--UUCGGCGUGcu-----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 32915 0.76 0.23535
Target:  5'- uUCGACGUCGcGAAuGCgGCACGGcgaccggcucaacaGGCGCg -3'
miRNA:   3'- -GGCUGUAGC-CUU-CGgCGUGCU--------------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 22901 0.76 0.237196
Target:  5'- gCGACuccggCGGAGGCUGC-CGggGCGa -3'
miRNA:   3'- gGCUGua---GCCUUCGGCGuGCuuCGCg -5'
11561 3' -54.6 NC_003085.1 + 16313 0.75 0.276686
Target:  5'- aUGACGggauggccCGGGAGuuGgGCGAAGCGCu -3'
miRNA:   3'- gGCUGUa-------GCCUUCggCgUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 44227 0.74 0.297583
Target:  5'- uUCG-CGUUGGAGGCCGCuuccugccgggccGCGucGCGCu -3'
miRNA:   3'- -GGCuGUAGCCUUCGGCG-------------UGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 5142 0.74 0.305824
Target:  5'- cCCGAaga-GGAGGCCGaCGCGAAG-GCa -3'
miRNA:   3'- -GGCUguagCCUUCGGC-GUGCUUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.