miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 22509 1.13 0.000629
Target:  5'- aCCGACAUCGGAAGCCGCACGAAGCGCc -3'
miRNA:   3'- -GGCUGUAGCCUUCGGCGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 11291 0.83 0.088219
Target:  5'- cCCGGCuUCGGAAGCgCGCGCu-GGCGCu -3'
miRNA:   3'- -GGCUGuAGCCUUCG-GCGUGcuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 14543 0.79 0.146262
Target:  5'- gUCGACGUCGGGAGggaauUC-CGCGAAGCGCu -3'
miRNA:   3'- -GGCUGUAGCCUUC-----GGcGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 2349 0.77 0.207992
Target:  5'- gCGACAUcCGGGAGgCGCaguGCGAGGcCGCg -3'
miRNA:   3'- gGCUGUA-GCCUUCgGCG---UGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 32166 0.77 0.207992
Target:  5'- aCGGCGUCGGccAGGCUGCGCcagugguGGCGCg -3'
miRNA:   3'- gGCUGUAGCC--UUCGGCGUGcu-----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 41789 0.77 0.207992
Target:  5'- gCCGAaGUUGGAGGCCGU--GAAGCGUg -3'
miRNA:   3'- -GGCUgUAGCCUUCGGCGugCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 32915 0.76 0.23535
Target:  5'- uUCGACGUCGcGAAuGCgGCACGGcgaccggcucaacaGGCGCg -3'
miRNA:   3'- -GGCUGUAGC-CUU-CGgCGUGCU--------------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 22901 0.76 0.237196
Target:  5'- gCGACuccggCGGAGGCUGC-CGggGCGa -3'
miRNA:   3'- gGCUGua---GCCUUCGGCGuGCuuCGCg -5'
11561 3' -54.6 NC_003085.1 + 23635 0.75 0.269756
Target:  5'- gCGACAUCGcAAcGCCGCGcCGAgcAGCGCc -3'
miRNA:   3'- gGCUGUAGCcUU-CGGCGU-GCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 11870 0.75 0.269756
Target:  5'- cCCGGCGaUGGGgcAGCCGaCACGcccgGAGCGCg -3'
miRNA:   3'- -GGCUGUaGCCU--UCGGC-GUGC----UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 16313 0.75 0.276686
Target:  5'- aUGACGggauggccCGGGAGuuGgGCGAAGCGCu -3'
miRNA:   3'- gGCUGUa-------GCCUUCggCgUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 44227 0.74 0.297583
Target:  5'- uUCG-CGUUGGAGGCCGCuuccugccgggccGCGucGCGCu -3'
miRNA:   3'- -GGCuGUAGCCUUCGGCG-------------UGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 36462 0.74 0.298325
Target:  5'- uCCGuCGUCcacccuGGAGGUCGCaugACGAAGUGCa -3'
miRNA:   3'- -GGCuGUAG------CCUUCGGCG---UGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 5142 0.74 0.305824
Target:  5'- cCCGAaga-GGAGGCCGaCGCGAAG-GCa -3'
miRNA:   3'- -GGCUguagCCUUCGGC-GUGCUUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 46823 0.74 0.305824
Target:  5'- uCCGGCGaggacuUCGGGcggcuggcAGCgCGCGCGAAGgCGCu -3'
miRNA:   3'- -GGCUGU------AGCCU--------UCG-GCGUGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 22622 0.74 0.308863
Target:  5'- aUCGGCAUCGGcaAGGCCGUugGccugcauguaccgcGGCGCu -3'
miRNA:   3'- -GGCUGUAGCC--UUCGGCGugCu-------------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 23570 0.74 0.313466
Target:  5'- gCGGCGUUGcGAuGUCGCugGAGGaCGCg -3'
miRNA:   3'- gGCUGUAGC-CUuCGGCGugCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 14942 0.74 0.321252
Target:  5'- uCCaACucgCGGAA-CUGCGCGAAGCGCu -3'
miRNA:   3'- -GGcUGua-GCCUUcGGCGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 7316 0.73 0.337256
Target:  5'- uCCGACGgccaucgCGGAGGCgGC-UGAGGaCGCg -3'
miRNA:   3'- -GGCUGUa------GCCUUCGgCGuGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 39589 0.73 0.353833
Target:  5'- aCUGGCAagCuGGAGCgCGuCGCGGAGCGCa -3'
miRNA:   3'- -GGCUGUa-GcCUUCG-GC-GUGCUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.