miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 49290 0.67 0.257606
Target:  5'- gUGGCUGCUGCGU--CGCGuCgGCGUCc -3'
miRNA:   3'- uGCCGGCGGCGCGaaGCGU-GgCGCGG- -5'
11562 3' -64 NC_003085.1 + 48992 0.68 0.194395
Target:  5'- gAUGGCCGUCGUGCgcuccuugUUGgccggguaguccuuCACCGCGaCCa -3'
miRNA:   3'- -UGCCGGCGGCGCGa-------AGC--------------GUGGCGC-GG- -5'
11562 3' -64 NC_003085.1 + 48918 0.72 0.098997
Target:  5'- cGCGGCCuaCgGCGggUUGUGCUGCGCCa -3'
miRNA:   3'- -UGCCGGcgG-CGCgaAGCGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 48905 0.73 0.086487
Target:  5'- --cGCCaGCCGCGCcgccUCGCGCCGUucGCCa -3'
miRNA:   3'- ugcCGG-CGGCGCGa---AGCGUGGCG--CGG- -5'
11562 3' -64 NC_003085.1 + 48682 0.72 0.113202
Target:  5'- uACGG-CGCCaaGCGCaUCGC-UCGCGCCu -3'
miRNA:   3'- -UGCCgGCGG--CGCGaAGCGuGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 48607 0.68 0.200912
Target:  5'- -aGGCgCGagcgaUGCGCUUgGCGCCGUauGCCu -3'
miRNA:   3'- ugCCG-GCg----GCGCGAAgCGUGGCG--CGG- -5'
11562 3' -64 NC_003085.1 + 48456 0.67 0.227771
Target:  5'- uGCGGCgcugcuCGCCGCGCUcaGgAgCGCGCg -3'
miRNA:   3'- -UGCCG------GCGGCGCGAagCgUgGCGCGg -5'
11562 3' -64 NC_003085.1 + 47950 0.7 0.163673
Target:  5'- uCGGCUGCCucuugcccgaGCGCcggaCGgGCCGCGUCg -3'
miRNA:   3'- uGCCGGCGG----------CGCGaa--GCgUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47820 0.8 0.027865
Target:  5'- cUGGCCGUCGaauugcgaCGCUacgCGCACCGCGCCc -3'
miRNA:   3'- uGCCGGCGGC--------GCGAa--GCGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47592 0.67 0.257606
Target:  5'- -gGGCCGaugaGCGCaagaCGgaGCCGCGCCu -3'
miRNA:   3'- ugCCGGCgg--CGCGaa--GCg-UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47524 0.66 0.275007
Target:  5'- uACGGCCaccgggaccgacgaGCC-CGCgagcgaugCGCAgCGCGCUg -3'
miRNA:   3'- -UGCCGG--------------CGGcGCGaa------GCGUgGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47006 0.66 0.276998
Target:  5'- uCGGCCcCUGCGCg-CGCcgaACCuGUGCCg -3'
miRNA:   3'- uGCCGGcGGCGCGaaGCG---UGG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 46807 0.66 0.304641
Target:  5'- gGCGGCUggcaGCgCGCGCgaagGCGCUGC-CCa -3'
miRNA:   3'- -UGCCGG----CG-GCGCGaag-CGUGGCGcGG- -5'
11562 3' -64 NC_003085.1 + 46710 0.68 0.209721
Target:  5'- cCGGCCagcggaguccuuggGCaGCGcCUUCGCGCgCGCuGCCa -3'
miRNA:   3'- uGCCGG--------------CGgCGC-GAAGCGUG-GCG-CGG- -5'
11562 3' -64 NC_003085.1 + 46670 0.71 0.136306
Target:  5'- gGCGcuucGCCGCCGC-CUggaGCGCCGcCGCUg -3'
miRNA:   3'- -UGC----CGGCGGCGcGAag-CGUGGC-GCGG- -5'
11562 3' -64 NC_003085.1 + 46153 0.66 0.295431
Target:  5'- aGCGGCuCGCCGUcgguaagcgcgacGCguacgugaaagCGUAUCGCGCg -3'
miRNA:   3'- -UGCCG-GCGGCG-------------CGaa---------GCGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 45986 0.67 0.250778
Target:  5'- cUGGCUGCCucucuggGCGCacacggCGaCACCuGCGCCu -3'
miRNA:   3'- uGCCGGCGG-------CGCGaa----GC-GUGG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 45208 0.66 0.290562
Target:  5'- gACGGaCGUCGUGUuucUUCGCcCaCGCGUCg -3'
miRNA:   3'- -UGCCgGCGGCGCG---AAGCGuG-GCGCGG- -5'
11562 3' -64 NC_003085.1 + 44967 0.77 0.043524
Target:  5'- uUGGCCcagucGCCagcGCGCUUCGuCACCGUGCCc -3'
miRNA:   3'- uGCCGG-----CGG---CGCGAAGC-GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 44381 0.66 0.270407
Target:  5'- cACuGUCGCuCGgGCUguUCGUcaucCCGCGCCg -3'
miRNA:   3'- -UGcCGGCG-GCgCGA--AGCGu---GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.