miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 49019 0.66 0.267934
Target:  5'- gGGCCGGaccggaugcGCGCUGCCcucgcggagauuGGCgaacgGCgCGAGGCg -3'
miRNA:   3'- -CCGGUU---------CGCGGCGG------------CCGg----CG-GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48905 0.68 0.179867
Target:  5'- cGCCAGccGCGCCGCCucgcGCCGUucgccaaucuccgCGAGGg -3'
miRNA:   3'- cCGGUU--CGCGGCGGc---CGGCG-------------GCUCCg -5'
11563 3' -65.3 NC_003085.1 + 48858 0.77 0.040314
Target:  5'- aGCCccgcgaagAAGCGCCGCCaGUCGCCacGGGGCa -3'
miRNA:   3'- cCGG--------UUCGCGGCGGcCGGCGG--CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48830 0.71 0.107105
Target:  5'- cGCCGAGCGCC-UUGGCgcagcacaaccCGCCGuAGGCc -3'
miRNA:   3'- cCGGUUCGCGGcGGCCG-----------GCGGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 48594 0.69 0.162794
Target:  5'- aGGCCc-GCGCC-CUcGCCGCCGAGa- -3'
miRNA:   3'- -CCGGuuCGCGGcGGcCGGCGGCUCcg -5'
11563 3' -65.3 NC_003085.1 + 48504 0.74 0.068556
Target:  5'- cGGCCu--CGCCguccaugcggaggaaGCCaGcGCCGCCGAGGCa -3'
miRNA:   3'- -CCGGuucGCGG---------------CGG-C-CGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48413 0.67 0.203044
Target:  5'- uGCCucGGCGgCGCUGGCuuccuccgcauggaCGgCGAGGCc -3'
miRNA:   3'- cCGGu-UCGCgGCGGCCG--------------GCgGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48379 0.67 0.22264
Target:  5'- cGCCGagacucgcuugcgguAGgGCCuaCGacGCUGCCGGGGCg -3'
miRNA:   3'- cCGGU---------------UCgCGGcgGC--CGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48315 0.7 0.124525
Target:  5'- cGGCgccGCGCUGCUggaggaguuggaggGGCUGCgGAGGCa -3'
miRNA:   3'- -CCGguuCGCGGCGG--------------CCGGCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 48276 0.66 0.243228
Target:  5'- uGGUCAauGGuCGCC-CCGGCagCGUCGuAGGCc -3'
miRNA:   3'- -CCGGU--UC-GCGGcGGCCG--GCGGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 47964 0.67 0.225965
Target:  5'- -cCCGAGCGCCGgaCgGGCCGCguCGAG-Ca -3'
miRNA:   3'- ccGGUUCGCGGC--GgCCGGCG--GCUCcG- -5'
11563 3' -65.3 NC_003085.1 + 47849 0.66 0.247411
Target:  5'- uGGCCGAagcacaagucgccuGCGagCGCCuGGCCGUCGAauuGCg -3'
miRNA:   3'- -CCGGUU--------------CGCg-GCGG-CCGGCGGCUc--CG- -5'
11563 3' -65.3 NC_003085.1 + 47766 0.68 0.17136
Target:  5'- cGGCCAGGCGCuCGCaGGCgacuugUGCUucGGCc -3'
miRNA:   3'- -CCGGUUCGCG-GCGgCCG------GCGGcuCCG- -5'
11563 3' -65.3 NC_003085.1 + 47005 0.68 0.180325
Target:  5'- cGGCCccuGCGCgCGCCGaaccugugccGCCuGCCGcGGUg -3'
miRNA:   3'- -CCGGuu-CGCG-GCGGC----------CGG-CGGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 46934 0.66 0.255336
Target:  5'- aGGUUcGGCGCgCGCaggGGCCGaCGcGGGCa -3'
miRNA:   3'- -CCGGuUCGCG-GCGg--CCGGCgGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 46921 0.68 0.1666
Target:  5'- aGGCCAaggcccagacgcuGGCGUCGCaacuCGGCgGC-GAGGUg -3'
miRNA:   3'- -CCGGU-------------UCGCGGCG----GCCGgCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 46664 0.7 0.128851
Target:  5'- uGCCGAGgcgcuuCGCCGCCGccuggagcGCCGCCGcuGCc -3'
miRNA:   3'- cCGGUUC------GCGGCGGC--------CGGCGGCucCG- -5'
11563 3' -65.3 NC_003085.1 + 46616 0.69 0.162794
Target:  5'- uGGCUcAGCccuccUCGcCCGGCUGCCG-GGCa -3'
miRNA:   3'- -CCGGuUCGc----GGC-GGCCGGCGGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 45919 0.66 0.261574
Target:  5'- cGCCuggacguGCGCCGCgacUGGCUGgCCGAGa- -3'
miRNA:   3'- cCGGuu-----CGCGGCG---GCCGGC-GGCUCcg -5'
11563 3' -65.3 NC_003085.1 + 45893 0.66 0.231601
Target:  5'- uGCCAcaGGCGCagguuCGCCGuGUgCGCCcagaGAGGCa -3'
miRNA:   3'- cCGGU--UCGCG-----GCGGC-CG-GCGG----CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.