miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 23303 0.66 0.267934
Target:  5'- uGCgAAGCGCgG-CGGCCGUCuGGaGCa -3'
miRNA:   3'- cCGgUUCGCGgCgGCCGGCGGcUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 38264 0.66 0.23969
Target:  5'- cGcCCGAGuUGCCGCCaGCCcaggggaacaccugcGCCGcGGCg -3'
miRNA:   3'- cC-GGUUC-GCGGCGGcCGG---------------CGGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 17057 0.66 0.237355
Target:  5'- cGCCGucGGCGUCGCgGGCC-CgGAGcGUc -3'
miRNA:   3'- cCGGU--UCGCGGCGgCCGGcGgCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 42102 0.78 0.029664
Target:  5'- cGGCUggagagaAGGCGCCcucguccguGCCGacGCCGCCGGGGCa -3'
miRNA:   3'- -CCGG-------UUCGCGG---------CGGC--CGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 31298 0.66 0.261574
Target:  5'- cGCuCAGGCGacaCGCCGa-UGuCCGAGGCg -3'
miRNA:   3'- cCG-GUUCGCg--GCGGCcgGC-GGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 31674 0.66 0.261574
Target:  5'- cGGCC-GGUGCCuCCuggGGCUGCacaacaacggaUGAGGCa -3'
miRNA:   3'- -CCGGuUCGCGGcGG---CCGGCG-----------GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 12620 0.66 0.25969
Target:  5'- cGGCCAgcGGCGCggguggcaucccucUGCCgcgauuucuGGCgGUgGAGGCu -3'
miRNA:   3'- -CCGGU--UCGCG--------------GCGG---------CCGgCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 5854 0.66 0.255336
Target:  5'- aGGCCAcGGCGUagaGCaCGcGCCGCUcaaGGGGg -3'
miRNA:   3'- -CCGGU-UCGCGg--CG-GC-CGGCGG---CUCCg -5'
11563 3' -65.3 NC_003085.1 + 1652 0.66 0.249221
Target:  5'- cGGCac-GCGUaCGCCGcGCCGCacuGcAGGCg -3'
miRNA:   3'- -CCGguuCGCG-GCGGC-CGGCGg--C-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 39174 0.66 0.242635
Target:  5'- cGGCCAggacugcggcgggAGCGuuGCCua-UGCgGAGGCu -3'
miRNA:   3'- -CCGGU-------------UCGCggCGGccgGCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 30591 0.66 0.245611
Target:  5'- -uCCAcGCGCCGCCuccuguccugcaucuGGCUGUCGucgaguccAGGCg -3'
miRNA:   3'- ccGGUuCGCGGCGG---------------CCGGCGGC--------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 26211 0.66 0.252876
Target:  5'- uGGCCAgcAGC-CCGaguuccaCGGCCGCgucguugaugaugGAGGCa -3'
miRNA:   3'- -CCGGU--UCGcGGCg------GCCGGCGg------------CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 44180 0.66 0.267934
Target:  5'- aGGCgGaagaGGCauuCCGUCGGCUGgCCGcGGCg -3'
miRNA:   3'- -CCGgU----UCGc--GGCGGCCGGC-GGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 23027 0.66 0.243228
Target:  5'- gGGCCGgcucguccGGCuuCGCCGucGCCGUCGAcgcGGCc -3'
miRNA:   3'- -CCGGU--------UCGcgGCGGC--CGGCGGCU---CCG- -5'
11563 3' -65.3 NC_003085.1 + 49019 0.66 0.267934
Target:  5'- gGGCCGGaccggaugcGCGCUGCCcucgcggagauuGGCgaacgGCgCGAGGCg -3'
miRNA:   3'- -CCGGUU---------CGCGGCGG------------CCGg----CG-GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 45022 0.66 0.255336
Target:  5'- gGGCCAacgaGGCGUuugaGcCCGGCUGCauCGGcGGCg -3'
miRNA:   3'- -CCGGU----UCGCGg---C-GGCCGGCG--GCU-CCG- -5'
11563 3' -65.3 NC_003085.1 + 19604 0.66 0.243228
Target:  5'- cGUCGGGCGCCGUCcgcugGGCUGCuCGAaaaGCu -3'
miRNA:   3'- cCGGUUCGCGGCGG-----CCGGCG-GCUc--CG- -5'
11563 3' -65.3 NC_003085.1 + 14988 0.66 0.237355
Target:  5'- cGCCAcGCGCUGgCGGCCGgUGc-GCa -3'
miRNA:   3'- cCGGUuCGCGGCgGCCGGCgGCucCG- -5'
11563 3' -65.3 NC_003085.1 + 23855 0.66 0.261574
Target:  5'- cGGCCGGaCGaauuCGCCcauGCCGCuuCGAGGCu -3'
miRNA:   3'- -CCGGUUcGCg---GCGGc--CGGCG--GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 45919 0.66 0.261574
Target:  5'- cGCCuggacguGCGCCGCgacUGGCUGgCCGAGa- -3'
miRNA:   3'- cCGGuu-----CGCGGCG---GCCGGC-GGCUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.