miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11573 5' -52.8 NC_003085.1 + 11327 0.66 0.827215
Target:  5'- aGGACUggaagucccgcGAGGUGGCGgaagaacucgGCGUcaGCCAGGa -3'
miRNA:   3'- gUUUGA-----------CUCCACCGU----------UGCG--CGGUUCc -5'
11573 5' -52.8 NC_003085.1 + 25784 0.66 0.827215
Target:  5'- -cGACgUGcAGGUGGgGACGCcGCUgAAGGa -3'
miRNA:   3'- guUUG-AC-UCCACCgUUGCG-CGG-UUCC- -5'
11573 5' -52.8 NC_003085.1 + 30317 0.66 0.827215
Target:  5'- gGGGCUGGGcGccGcGCAAggccUGCGCCAGGGc -3'
miRNA:   3'- gUUUGACUC-Ca-C-CGUU----GCGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 42924 0.66 0.817783
Target:  5'- cCGGGCcggGAGGUGGgGagacgaagacGCGCGCCGc-- -3'
miRNA:   3'- -GUUUGa--CUCCACCgU----------UGCGCGGUucc -5'
11573 5' -52.8 NC_003085.1 + 41464 0.66 0.808143
Target:  5'- aAGGCUGGGGcgcgGGUGAaguacCGCGCCAGc- -3'
miRNA:   3'- gUUUGACUCCa---CCGUU-----GCGCGGUUcc -5'
11573 5' -52.8 NC_003085.1 + 18550 0.66 0.797316
Target:  5'- gAAGCacGAGGUGGCGggcaaggACG-GCCAAGc -3'
miRNA:   3'- gUUUGa-CUCCACCGU-------UGCgCGGUUCc -5'
11573 5' -52.8 NC_003085.1 + 17957 0.66 0.794324
Target:  5'- --uGCUGGGGcaccugaagcgccGGCAGCGCggGCCGcAGGg -3'
miRNA:   3'- guuUGACUCCa------------CCGUUGCG--CGGU-UCC- -5'
11573 5' -52.8 NC_003085.1 + 15973 0.66 0.788292
Target:  5'- --cGCUGGGaGguggGGCGugaGCGUCAGGGu -3'
miRNA:   3'- guuUGACUC-Ca---CCGUug-CGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 24636 0.66 0.788292
Target:  5'- cCAGACaugaUGAGGUcaGGCAugucCGCGCCGc-- -3'
miRNA:   3'- -GUUUG----ACUCCA--CCGUu---GCGCGGUucc -5'
11573 5' -52.8 NC_003085.1 + 48192 0.67 0.778103
Target:  5'- cCAGACUGc--UGGCGACGUugccGCCAAGu -3'
miRNA:   3'- -GUUUGACuccACCGUUGCG----CGGUUCc -5'
11573 5' -52.8 NC_003085.1 + 32176 0.67 0.778103
Target:  5'- cCAGGCUGcgccaguGGUGGCGcgcgugcuucaACGCGCCc--- -3'
miRNA:   3'- -GUUUGACu------CCACCGU-----------UGCGCGGuucc -5'
11573 5' -52.8 NC_003085.1 + 2965 0.67 0.777075
Target:  5'- uCAAGCgcgcGGUGGUuucgucgAGCGCGCguGGGa -3'
miRNA:   3'- -GUUUGacu-CCACCG-------UUGCGCGguUCC- -5'
11573 5' -52.8 NC_003085.1 + 20317 0.67 0.754083
Target:  5'- -cGACUGcgccaccugggcgaAGGUGGCGACGUaCCGgaAGGc -3'
miRNA:   3'- guUUGAC--------------UCCACCGUUGCGcGGU--UCC- -5'
11573 5' -52.8 NC_003085.1 + 2432 0.67 0.746627
Target:  5'- ---cCUGGGGUGGUAGauggaGCGCCu--- -3'
miRNA:   3'- guuuGACUCCACCGUUg----CGCGGuucc -5'
11573 5' -52.8 NC_003085.1 + 43056 0.67 0.735874
Target:  5'- --cGCUGGGGaacGGCuGCGUggagacacgGCCGAGGa -3'
miRNA:   3'- guuUGACUCCa--CCGuUGCG---------CGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 46828 0.67 0.735874
Target:  5'- uGGACUccggcGAGGacuucgggcggcUGGCAGCGCGCgCgAAGGc -3'
miRNA:   3'- gUUUGA-----CUCC------------ACCGUUGCGCG-G-UUCC- -5'
11573 5' -52.8 NC_003085.1 + 40376 0.67 0.735874
Target:  5'- -cGGC-GAGGUagagGGCGACGCuGCCcAGGc -3'
miRNA:   3'- guUUGaCUCCA----CCGUUGCG-CGGuUCC- -5'
11573 5' -52.8 NC_003085.1 + 11596 0.67 0.72501
Target:  5'- gGAAC-GGGGcagGGCGGCGCGaaGGGGc -3'
miRNA:   3'- gUUUGaCUCCa--CCGUUGCGCggUUCC- -5'
11573 5' -52.8 NC_003085.1 + 35203 0.67 0.72501
Target:  5'- --uACUGGGacGGCAAUGCGCCcGGa -3'
miRNA:   3'- guuUGACUCcaCCGUUGCGCGGuUCc -5'
11573 5' -52.8 NC_003085.1 + 8815 0.67 0.72501
Target:  5'- gGGACUGAGGcugccgagacaUGGCuGCGCGagCAGGa -3'
miRNA:   3'- gUUUGACUCC-----------ACCGuUGCGCg-GUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.