miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11579 3' -54.6 NC_003085.1 + 48577 0.66 0.732407
Target:  5'- gCCGAGaaggaGGUC-GCAGCGCucAACGAg -3'
miRNA:   3'- aGGCUUaag--CCGGuCGUCGCG--UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 36240 0.66 0.721636
Target:  5'- -aCGAAUcgCGGCgAGCGGU-CGGCGAc -3'
miRNA:   3'- agGCUUAa-GCCGgUCGUCGcGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 46162 0.66 0.721636
Target:  5'- aUCCGAcccagCGGCUcGCcgucgguaAGCGCGACGc -3'
miRNA:   3'- -AGGCUuaa--GCCGGuCG--------UCGCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 17967 0.66 0.710774
Target:  5'- cCUGAAgc--GCCGGCAGCGCGggccgcagggcACGGa -3'
miRNA:   3'- aGGCUUaagcCGGUCGUCGCGU-----------UGCU- -5'
11579 3' -54.6 NC_003085.1 + 1124 0.66 0.710774
Target:  5'- cCCGAuguccaUCGGCCgagAGCGuGgGCGAUGAg -3'
miRNA:   3'- aGGCUua----AGCCGG---UCGU-CgCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 22775 0.66 0.710774
Target:  5'- gCCGcgg-UGGCgaCGGCAGCGgCAACGGc -3'
miRNA:   3'- aGGCuuaaGCCG--GUCGUCGC-GUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 15362 0.66 0.699832
Target:  5'- cCCG-----GGCCAGCaugacgcgGGCGCGGCGGg -3'
miRNA:   3'- aGGCuuaagCCGGUCG--------UCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 40505 0.66 0.699832
Target:  5'- gCUGGAcggCGGCaGGCAGCGCGccucCGAa -3'
miRNA:   3'- aGGCUUaa-GCCGgUCGUCGCGUu---GCU- -5'
11579 3' -54.6 NC_003085.1 + 6746 0.66 0.699832
Target:  5'- gUCCGAcugccCGGCCuGCcGCGCcguGGCGGa -3'
miRNA:   3'- -AGGCUuaa--GCCGGuCGuCGCG---UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 13552 0.66 0.699832
Target:  5'- cUCCGAGguccaGGUCgAGCcGCGCcGCGAu -3'
miRNA:   3'- -AGGCUUaag--CCGG-UCGuCGCGuUGCU- -5'
11579 3' -54.6 NC_003085.1 + 29843 0.66 0.698734
Target:  5'- gCCGccag-GGCCAGUgcgcacgagguggGGCGCGACGGc -3'
miRNA:   3'- aGGCuuaagCCGGUCG-------------UCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 43540 0.67 0.682188
Target:  5'- gUCGAGUgggugcgugacgucaUCGcUCAGCAGCGCGGCa- -3'
miRNA:   3'- aGGCUUA---------------AGCcGGUCGUCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 2396 0.67 0.677755
Target:  5'- aCCGAugaagcggCGGCCGGUGGCGaGGCa- -3'
miRNA:   3'- aGGCUuaa-----GCCGGUCGUCGCgUUGcu -5'
11579 3' -54.6 NC_003085.1 + 44166 0.67 0.666645
Target:  5'- uUCCG---UCGGCUGGC--CGCGGCGAu -3'
miRNA:   3'- -AGGCuuaAGCCGGUCGucGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 40048 0.67 0.666645
Target:  5'- cUCCGGAUacgucgCGGUgacgaUGGCGGCGCGcgGCGGg -3'
miRNA:   3'- -AGGCUUAa-----GCCG-----GUCGUCGCGU--UGCU- -5'
11579 3' -54.6 NC_003085.1 + 40463 0.67 0.666645
Target:  5'- gUUGGAUgcCGGCCAGCgccagaggcgucAGCGCcGCGGg -3'
miRNA:   3'- aGGCUUAa-GCCGGUCG------------UCGCGuUGCU- -5'
11579 3' -54.6 NC_003085.1 + 38223 0.67 0.666645
Target:  5'- -gCGGGgagCGccaccaccaacGCCAGCAGgGCGGCGAg -3'
miRNA:   3'- agGCUUaa-GC-----------CGGUCGUCgCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 30697 0.67 0.6555
Target:  5'- gCUGAGga-GGCgaAGCGGCGCAAgGGg -3'
miRNA:   3'- aGGCUUaagCCGg-UCGUCGCGUUgCU- -5'
11579 3' -54.6 NC_003085.1 + 26221 0.67 0.644334
Target:  5'- cCUGAAgucccUCGGCCAggauauGguGCGCGACu- -3'
miRNA:   3'- aGGCUUa----AGCCGGU------CguCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 46371 0.67 0.640981
Target:  5'- aUCCGccgUCGGCCuGCGgcucgucacgcuguGCGCggUGAc -3'
miRNA:   3'- -AGGCuuaAGCCGGuCGU--------------CGCGuuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.