miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 40892 0.66 0.267885
Target:  5'- cGGCGGCaugccaCGGuuGUU-GCGGCGGGa- -3'
miRNA:   3'- -UCGCCGg-----GCCggCGAgCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 24642 0.68 0.184223
Target:  5'- cGGCGuCCUGguugaaaGCCGCgcgcCGCGACGGGCu -3'
miRNA:   3'- -UCGCcGGGC-------CGGCGa---GCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 26221 0.69 0.162484
Target:  5'- gGGCGGCgCGG-UGCgaagCGCGGCGGcCGu -3'
miRNA:   3'- -UCGCCGgGCCgGCGa---GCGCUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 26679 0.76 0.045967
Target:  5'- gAGCGGCCguuGCCGCUgccgucgccacCGCGGCGGGCGu -3'
miRNA:   3'- -UCGCCGGgc-CGGCGA-----------GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 23899 0.66 0.261505
Target:  5'- aGGCGGUCCGcGCCcgccugcuucuGCcCGCuAUGGGCAg -3'
miRNA:   3'- -UCGCCGGGC-CGG-----------CGaGCGcUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 9499 0.66 0.255248
Target:  5'- cGCGGUgacgaUGGCgGCgCGCGGCGGGuCAu -3'
miRNA:   3'- uCGCCGg----GCCGgCGaGCGCUGCCU-GU- -5'
11585 5' -65.1 NC_003085.1 + 13441 0.66 0.241324
Target:  5'- cGGCGuGCCCauGGCCGCcauccgccaagcugUCGCGGagcguuuccUGGGCGu -3'
miRNA:   3'- -UCGC-CGGG--CCGGCG--------------AGCGCU---------GCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 45898 0.66 0.236631
Target:  5'- aGGCGcgcuugcGCCCGGCCGCcuugaGCGugGucCAa -3'
miRNA:   3'- -UCGC-------CGGGCCGGCGag---CGCugCcuGU- -5'
11585 5' -65.1 NC_003085.1 + 47479 0.67 0.209538
Target:  5'- aAGUGGaCgGGCUGCUcaugcaCGCGGCGGAa- -3'
miRNA:   3'- -UCGCCgGgCCGGCGA------GCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 1501 0.68 0.184693
Target:  5'- cGCGGCCCGuCCGg-CGCu-CGGGCAa -3'
miRNA:   3'- uCGCCGGGCcGGCgaGCGcuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 5727 0.68 0.194303
Target:  5'- gGGCGGaCCCGGCucggguguccCGCgUCGauugggccauUGACGGACGu -3'
miRNA:   3'- -UCGCC-GGGCCG----------GCG-AGC----------GCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 14915 0.67 0.214841
Target:  5'- cGCGGgCCGGCugguggCGCUCGCGGCc---- -3'
miRNA:   3'- uCGCCgGGCCG------GCGAGCGCUGccugu -5'
11585 5' -65.1 NC_003085.1 + 31493 0.66 0.267885
Target:  5'- uGCGGCCCGcGCUGCcggCGCuucaGGugGc -3'
miRNA:   3'- uCGCCGGGC-CGGCGa--GCGcug-CCugU- -5'
11585 5' -65.1 NC_003085.1 + 27338 0.68 0.194303
Target:  5'- --gGGUCCGGCUGCUgCGgCGcCGGGCu -3'
miRNA:   3'- ucgCCGGGCCGGCGA-GC-GCuGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 24679 0.66 0.267885
Target:  5'- gAGCGGCaccauguuCCGGUC-CUUGUG-CGGGCGg -3'
miRNA:   3'- -UCGCCG--------GGCCGGcGAGCGCuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 45233 0.67 0.225793
Target:  5'- uGCGGCCCGGCugaCGCUCaGCGuaacccgccGCGcGuCAg -3'
miRNA:   3'- uCGCCGGGCCG---GCGAG-CGC---------UGC-CuGU- -5'
11585 5' -65.1 NC_003085.1 + 5227 0.68 0.194303
Target:  5'- cGCGGCCCGGCaggaaGCggccuccaaCGCGAaugGGugGc -3'
miRNA:   3'- uCGCCGGGCCGg----CGa--------GCGCUg--CCugU- -5'
11585 5' -65.1 NC_003085.1 + 13587 0.68 0.171064
Target:  5'- cGCGGCCCGG-UGUcaUCGCGuACuGGACc -3'
miRNA:   3'- uCGCCGGGCCgGCG--AGCGC-UG-CCUGu -5'
11585 5' -65.1 NC_003085.1 + 6442 0.66 0.261505
Target:  5'- -aCGGCCCGGUugguagagguguUGCUgGCGAagaUGGACu -3'
miRNA:   3'- ucGCCGGGCCG------------GCGAgCGCU---GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 5501 0.66 0.243104
Target:  5'- uGgGGCCgGGCCGUgagggagcaCGUGAacgaGGACAc -3'
miRNA:   3'- uCgCCGGgCCGGCGa--------GCGCUg---CCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.