Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11596 | 5' | -58 | NC_003085.1 | + | 36016 | 0.66 | 0.576134 |
Target: 5'- gCUugGCGGAUGGCGGC-CAUggGCa- -3' miRNA: 3'- -GAugCGCCUGUCGCUGcGUGgaCGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 16996 | 0.66 | 0.565483 |
Target: 5'- -gACGCcGACGGCGACGagaAgC-GCGGa -3' miRNA: 3'- gaUGCGcCUGUCGCUGCg--UgGaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 24202 | 0.66 | 0.565483 |
Target: 5'- -gGCGCGccGACGaCGACGC-CCgccGCGGa -3' miRNA: 3'- gaUGCGC--CUGUcGCUGCGuGGa--CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 227 | 0.66 | 0.576134 |
Target: 5'- ---aGCGGGCAGUGGaagagGCGCCUcgagaaGUGGa -3' miRNA: 3'- gaugCGCCUGUCGCUg----CGUGGA------CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 36446 | 0.66 | 0.586829 |
Target: 5'- --gUGCGGAgGGCGGCGC-CUcaugGCGa -3' miRNA: 3'- gauGCGCCUgUCGCUGCGuGGa---CGCc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 21023 | 0.66 | 0.565483 |
Target: 5'- -gACGCGGACGGCaGcCGCAaucUCUG-GGc -3' miRNA: 3'- gaUGCGCCUGUCG-CuGCGU---GGACgCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 13552 | 0.66 | 0.586829 |
Target: 5'- cCUGCGCGGcUGGcCGugGCAuggcCCUG-GGa -3' miRNA: 3'- -GAUGCGCCuGUC-GCugCGU----GGACgCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 21334 | 0.66 | 0.586829 |
Target: 5'- -aGCGuCGGccGCAGCaACuGCACCUGCu- -3' miRNA: 3'- gaUGC-GCC--UGUCGcUG-CGUGGACGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 34910 | 0.66 | 0.583616 |
Target: 5'- -gGCGUGG-CGGCcuacgaguggugcaGGCGCACgCgGCGGa -3' miRNA: 3'- gaUGCGCCuGUCG--------------CUGCGUG-GaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 41006 | 0.66 | 0.576134 |
Target: 5'- -gGCGCGucauguagagcGACAGgGACgGCugCUGCuGGc -3' miRNA: 3'- gaUGCGC-----------CUGUCgCUG-CGugGACG-CC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 29100 | 0.66 | 0.565483 |
Target: 5'- uUGCcCGGcgucagcaGCGGCGACGCGgC-GCGGa -3' miRNA: 3'- gAUGcGCC--------UGUCGCUGCGUgGaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 7040 | 0.66 | 0.533871 |
Target: 5'- -cGCGgGGugGGCGAUGaGCCcGCGc -3' miRNA: 3'- gaUGCgCCugUCGCUGCgUGGaCGCc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 14955 | 0.66 | 0.544345 |
Target: 5'- aCUGCGCGaagcGCuGCGGCcCACCUcCGGg -3' miRNA: 3'- -GAUGCGCc---UGuCGCUGcGUGGAcGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 28596 | 0.66 | 0.543294 |
Target: 5'- -gGCgGUGGACacgccggugguguGGCGcuCGCugCUGCGGc -3' miRNA: 3'- gaUG-CGCCUG-------------UCGCu-GCGugGACGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 26716 | 0.66 | 0.533871 |
Target: 5'- -cGCGCaGGGCGGUGACgGCGCg-GCGc -3' miRNA: 3'- gaUGCG-CCUGUCGCUG-CGUGgaCGCc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 13918 | 0.66 | 0.532828 |
Target: 5'- gUGCGCgcguuucGGACGGgGcGCGCGCCgaagaagaaGCGGa -3' miRNA: 3'- gAUGCG-------CCUGUCgC-UGCGUGGa--------CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 14169 | 0.66 | 0.554884 |
Target: 5'- cCUGCGCGauGACAuGU-AUGCACCUGUGc -3' miRNA: 3'- -GAUGCGC--CUGU-CGcUGCGUGGACGCc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 38856 | 0.66 | 0.544345 |
Target: 5'- aCUGCGaCGGcgcGCGGCGACaGCAUCaUGUucGGg -3' miRNA: 3'- -GAUGC-GCC---UGUCGCUG-CGUGG-ACG--CC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 8724 | 0.66 | 0.565483 |
Target: 5'- -cACGUGG-CAGUGcuaccuGCGCGCCUucGUGGc -3' miRNA: 3'- gaUGCGCCuGUCGC------UGCGUGGA--CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 27232 | 0.66 | 0.544345 |
Target: 5'- uCUACGCGGACga-GACGaaugGCCUGUuccGGu -3' miRNA: 3'- -GAUGCGCCUGucgCUGCg---UGGACG---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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