Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11596 | 5' | -58 | NC_003085.1 | + | 37285 | 1.09 | 0.000513 |
Target: 5'- uCUACGCGGACAGCGACGCACCUGCGGu -3' miRNA: 3'- -GAUGCGCCUGUCGCUGCGUGGACGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 25792 | 0.8 | 0.074496 |
Target: 5'- gCUGCGUGGACgccugGGCGGCGUucGCCUGCGcGg -3' miRNA: 3'- -GAUGCGCCUG-----UCGCUGCG--UGGACGC-C- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 18139 | 0.77 | 0.11969 |
Target: 5'- -cGCGCGGACaaGGUGACGgACCcgagGCGGa -3' miRNA: 3'- gaUGCGCCUG--UCGCUGCgUGGa---CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 39037 | 0.75 | 0.161414 |
Target: 5'- aUGCGUGGGCgAGCGcugcGCGUACCUGCu- -3' miRNA: 3'- gAUGCGCCUG-UCGC----UGCGUGGACGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 29202 | 0.74 | 0.194403 |
Target: 5'- -gACGCGGA--GCGcACGCGCCUGCu- -3' miRNA: 3'- gaUGCGCCUguCGC-UGCGUGGACGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 28026 | 0.73 | 0.221453 |
Target: 5'- gCUACGUGGACGGCGuC-CuCCUGuCGGa -3' miRNA: 3'- -GAUGCGCCUGUCGCuGcGuGGAC-GCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 3564 | 0.72 | 0.245347 |
Target: 5'- -gGCGCacACGGCGACaccuGCGCCUGUGGc -3' miRNA: 3'- gaUGCGccUGUCGCUG----CGUGGACGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 32927 | 0.72 | 0.257427 |
Target: 5'- -aAUGCGGcACGGCGaccggcucaacagGCGCGCCUGCc- -3' miRNA: 3'- gaUGCGCC-UGUCGC-------------UGCGUGGACGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 454 | 0.72 | 0.258076 |
Target: 5'- -gGCGCGGAgggcCAGcCGGCGCugUUGCaGGu -3' miRNA: 3'- gaUGCGCCU----GUC-GCUGCGugGACG-CC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 12000 | 0.72 | 0.264641 |
Target: 5'- --cUGCGGcaGCAGCGgccugacgcugGCGCACCUGCcGGu -3' miRNA: 3'- gauGCGCC--UGUCGC-----------UGCGUGGACG-CC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 14913 | 0.71 | 0.278175 |
Target: 5'- -cACGCGGGcCGGCugGugGCGCUcGCGGc -3' miRNA: 3'- gaUGCGCCU-GUCG--CugCGUGGaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 26215 | 0.71 | 0.278175 |
Target: 5'- gUGCGCGGGCGGCGcggugcgaaGCGCg-GCGGc -3' miRNA: 3'- gAUGCGCCUGUCGCug-------CGUGgaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 30336 | 0.71 | 0.285147 |
Target: 5'- cCUG-GCGGACGcugucGCGGgGCGCaCUGCGGc -3' miRNA: 3'- -GAUgCGCCUGU-----CGCUgCGUG-GACGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 25353 | 0.71 | 0.292256 |
Target: 5'- -cGCGCuuccGGACGGUGACGggcaCGCCgacgGCGGg -3' miRNA: 3'- gaUGCG----CCUGUCGCUGC----GUGGa---CGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 26246 | 0.71 | 0.292256 |
Target: 5'- gUGCGCGacuacCAGUgGACGCACCUGCa- -3' miRNA: 3'- gAUGCGCcu---GUCG-CUGCGUGGACGcc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 22039 | 0.71 | 0.299503 |
Target: 5'- gCUGCGCuGuacCGGCGAuUGCGCCcGCGGg -3' miRNA: 3'- -GAUGCGcCu--GUCGCU-GCGUGGaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 45264 | 0.71 | 0.306887 |
Target: 5'- -cGCGCGu-CAGCGGCGU-CCUGCGu -3' miRNA: 3'- gaUGCGCcuGUCGCUGCGuGGACGCc -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 32036 | 0.71 | 0.314411 |
Target: 5'- -gGCGCGGugAuggggGCGGCGagugGCCUGgGGg -3' miRNA: 3'- gaUGCGCCugU-----CGCUGCg---UGGACgCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 24438 | 0.7 | 0.321301 |
Target: 5'- -cGCGCGGGugauggugccCAGCGGCGCcuucugcACC-GCGGa -3' miRNA: 3'- gaUGCGCCU----------GUCGCUGCG-------UGGaCGCC- -5' |
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11596 | 5' | -58 | NC_003085.1 | + | 41052 | 0.7 | 0.322073 |
Target: 5'- gCUugGCGGGCuGCuACGCGaCUGgGGg -3' miRNA: 3'- -GAugCGCCUGuCGcUGCGUgGACgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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