miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11596 5' -58 NC_003085.1 + 48387 0.69 0.405317
Target:  5'- -aGCGCGGcgaGCAGCGcCGCauugucuGCCUcgGCGGc -3'
miRNA:   3'- gaUGCGCC---UGUCGCuGCG-------UGGA--CGCC- -5'
11596 5' -58 NC_003085.1 + 41052 0.7 0.322073
Target:  5'- gCUugGCGGGCuGCuACGCGaCUGgGGg -3'
miRNA:   3'- -GAugCGCCUGuCGcUGCGUgGACgCC- -5'
11596 5' -58 NC_003085.1 + 11767 0.7 0.337813
Target:  5'- uCUACGaCGGuACGGCGGCGcCGCgCUcCGGg -3'
miRNA:   3'- -GAUGC-GCC-UGUCGCUGC-GUG-GAcGCC- -5'
11596 5' -58 NC_003085.1 + 43519 0.7 0.337813
Target:  5'- -gGCGUGGACGG-GAacgGCGCCgaagGCGGc -3'
miRNA:   3'- gaUGCGCCUGUCgCUg--CGUGGa---CGCC- -5'
11596 5' -58 NC_003085.1 + 27614 0.7 0.337813
Target:  5'- cCUGCGCGGu--GUGugGaGCCUGgGGg -3'
miRNA:   3'- -GAUGCGCCuguCGCugCgUGGACgCC- -5'
11596 5' -58 NC_003085.1 + 11646 0.69 0.370944
Target:  5'- -cGCGCGGAgGGCauUGCGCCggGUGGc -3'
miRNA:   3'- gaUGCGCCUgUCGcuGCGUGGa-CGCC- -5'
11596 5' -58 NC_003085.1 + 20086 0.69 0.370944
Target:  5'- -cACGCGcGCuGUGACGUGCCgcaggugGCGGg -3'
miRNA:   3'- gaUGCGCcUGuCGCUGCGUGGa------CGCC- -5'
11596 5' -58 NC_003085.1 + 17167 0.69 0.388321
Target:  5'- -gAgGCGGAC-GUGGCcCACCUGaCGGg -3'
miRNA:   3'- gaUgCGCCUGuCGCUGcGUGGAC-GCC- -5'
11596 5' -58 NC_003085.1 + 15513 0.69 0.397208
Target:  5'- aCUugGCGGAguugaAGCGACugGCGCagGCGGu -3'
miRNA:   3'- -GAugCGCCUg----UCGCUG--CGUGgaCGCC- -5'
11596 5' -58 NC_003085.1 + 32036 0.71 0.314411
Target:  5'- -gGCGCGGugAuggggGCGGCGagugGCCUGgGGg -3'
miRNA:   3'- gaUGCGCCugU-----CGCUGCg---UGGACgCC- -5'
11596 5' -58 NC_003085.1 + 25353 0.71 0.292256
Target:  5'- -cGCGCuuccGGACGGUGACGggcaCGCCgacgGCGGg -3'
miRNA:   3'- gaUGCG----CCUGUCGCUGC----GUGGa---CGCC- -5'
11596 5' -58 NC_003085.1 + 26246 0.71 0.292256
Target:  5'- gUGCGCGacuacCAGUgGACGCACCUGCa- -3'
miRNA:   3'- gAUGCGCcu---GUCG-CUGCGUGGACGcc -5'
11596 5' -58 NC_003085.1 + 18139 0.77 0.11969
Target:  5'- -cGCGCGGACaaGGUGACGgACCcgagGCGGa -3'
miRNA:   3'- gaUGCGCCUG--UCGCUGCgUGGa---CGCC- -5'
11596 5' -58 NC_003085.1 + 39037 0.75 0.161414
Target:  5'- aUGCGUGGGCgAGCGcugcGCGUACCUGCu- -3'
miRNA:   3'- gAUGCGCCUG-UCGC----UGCGUGGACGcc -5'
11596 5' -58 NC_003085.1 + 29202 0.74 0.194403
Target:  5'- -gACGCGGA--GCGcACGCGCCUGCu- -3'
miRNA:   3'- gaUGCGCCUguCGC-UGCGUGGACGcc -5'
11596 5' -58 NC_003085.1 + 28026 0.73 0.221453
Target:  5'- gCUACGUGGACGGCGuC-CuCCUGuCGGa -3'
miRNA:   3'- -GAUGCGCCUGUCGCuGcGuGGAC-GCC- -5'
11596 5' -58 NC_003085.1 + 32927 0.72 0.257427
Target:  5'- -aAUGCGGcACGGCGaccggcucaacagGCGCGCCUGCc- -3'
miRNA:   3'- gaUGCGCC-UGUCGC-------------UGCGUGGACGcc -5'
11596 5' -58 NC_003085.1 + 454 0.72 0.258076
Target:  5'- -gGCGCGGAgggcCAGcCGGCGCugUUGCaGGu -3'
miRNA:   3'- gaUGCGCCU----GUC-GCUGCGugGACG-CC- -5'
11596 5' -58 NC_003085.1 + 12000 0.72 0.264641
Target:  5'- --cUGCGGcaGCAGCGgccugacgcugGCGCACCUGCcGGu -3'
miRNA:   3'- gauGCGCC--UGUCGC-----------UGCGUGGACG-CC- -5'
11596 5' -58 NC_003085.1 + 30336 0.71 0.285147
Target:  5'- cCUG-GCGGACGcugucGCGGgGCGCaCUGCGGc -3'
miRNA:   3'- -GAUgCGCCUGU-----CGCUgCGUG-GACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.