miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11596 5' -58 NC_003085.1 + 103 0.7 0.337813
Target:  5'- -gACgGCGGACgGGCGGCGgGCCcccaaUGUGGg -3'
miRNA:   3'- gaUG-CGCCUG-UCGCUGCgUGG-----ACGCC- -5'
11596 5' -58 NC_003085.1 + 227 0.66 0.576134
Target:  5'- ---aGCGGGCAGUGGaagagGCGCCUcgagaaGUGGa -3'
miRNA:   3'- gaugCGCCUGUCGCUg----CGUGGA------CGCC- -5'
11596 5' -58 NC_003085.1 + 454 0.72 0.258076
Target:  5'- -gGCGCGGAgggcCAGcCGGCGCugUUGCaGGu -3'
miRNA:   3'- gaUGCGCCU----GUC-GCUGCGugGACG-CC- -5'
11596 5' -58 NC_003085.1 + 559 0.7 0.34589
Target:  5'- -gGCGCGa--GGCGGCGCGgCUGgCGGg -3'
miRNA:   3'- gaUGCGCcugUCGCUGCGUgGAC-GCC- -5'
11596 5' -58 NC_003085.1 + 705 0.66 0.544345
Target:  5'- -cACG-GGGCAacuccGCGugGCGCCUGaCGc -3'
miRNA:   3'- gaUGCgCCUGU-----CGCugCGUGGAC-GCc -5'
11596 5' -58 NC_003085.1 + 2071 0.68 0.415368
Target:  5'- -gGCcCGGACGGUGACGCgACgaGCGc -3'
miRNA:   3'- gaUGcGCCUGUCGCUGCG-UGgaCGCc -5'
11596 5' -58 NC_003085.1 + 2209 0.7 0.322073
Target:  5'- ---gGCGGACGGUGACGCcugagcacaacGCCaugGUGGa -3'
miRNA:   3'- gaugCGCCUGUCGCUGCG-----------UGGa--CGCC- -5'
11596 5' -58 NC_003085.1 + 2779 0.67 0.52347
Target:  5'- ---aGCaGGCAGCGGCGgCGCUccagGCGGc -3'
miRNA:   3'- gaugCGcCUGUCGCUGC-GUGGa---CGCC- -5'
11596 5' -58 NC_003085.1 + 3411 0.68 0.44354
Target:  5'- -aGgGCGGguGCAGcCGuauCGCGCCUGCuGGa -3'
miRNA:   3'- gaUgCGCC--UGUC-GCu--GCGUGGACG-CC- -5'
11596 5' -58 NC_003085.1 + 3564 0.72 0.245347
Target:  5'- -gGCGCacACGGCGACaccuGCGCCUGUGGc -3'
miRNA:   3'- gaUGCGccUGUCGCUG----CGUGGACGCC- -5'
11596 5' -58 NC_003085.1 + 3566 0.67 0.52347
Target:  5'- -gGCGgcCGGGCGGCaaGCGCGCCUcgcugccgagGCGGc -3'
miRNA:   3'- gaUGC--GCCUGUCGc-UGCGUGGA----------CGCC- -5'
11596 5' -58 NC_003085.1 + 4199 0.69 0.406224
Target:  5'- -gACGCaGGACGccGCuGACGCGCg-GCGGg -3'
miRNA:   3'- gaUGCG-CCUGU--CG-CUGCGUGgaCGCC- -5'
11596 5' -58 NC_003085.1 + 5157 0.67 0.502909
Target:  5'- -gACGCGaaGGCAGCGGC-CAuCCUggcGCGGa -3'
miRNA:   3'- gaUGCGC--CUGUCGCUGcGU-GGA---CGCC- -5'
11596 5' -58 NC_003085.1 + 5908 0.66 0.554884
Target:  5'- -gACGCGGGCcuaucucgcgcaAGCugGACGCGCCgccuucgGCGc -3'
miRNA:   3'- gaUGCGCCUG------------UCG--CUGCGUGGa------CGCc -5'
11596 5' -58 NC_003085.1 + 6026 0.69 0.403506
Target:  5'- -aGCGCGG-CAccccucacgacgacGCGACGC-UCUGUGGg -3'
miRNA:   3'- gaUGCGCCuGU--------------CGCUGCGuGGACGCC- -5'
11596 5' -58 NC_003085.1 + 7040 0.66 0.533871
Target:  5'- -cGCGgGGugGGCGAUGaGCCcGCGc -3'
miRNA:   3'- gaUGCgCCugUCGCUGCgUGGaCGCc -5'
11596 5' -58 NC_003085.1 + 7538 0.67 0.482708
Target:  5'- -cGCGCGGGCcgagggguGUGACGUcgACCUugccGCGGc -3'
miRNA:   3'- gaUGCGCCUGu-------CGCUGCG--UGGA----CGCC- -5'
11596 5' -58 NC_003085.1 + 7584 0.67 0.472755
Target:  5'- gCUGCGUcaGGGCuacacGuCGGCGCACCgcgagGUGGa -3'
miRNA:   3'- -GAUGCG--CCUGu----C-GCUGCGUGGa----CGCC- -5'
11596 5' -58 NC_003085.1 + 7646 0.66 0.543294
Target:  5'- -gGCGCuuGGGCGGCGccgacauGCGCgaGCCUGUGc -3'
miRNA:   3'- gaUGCG--CCUGUCGC-------UGCG--UGGACGCc -5'
11596 5' -58 NC_003085.1 + 8724 0.66 0.565483
Target:  5'- -cACGUGG-CAGUGcuaccuGCGCGCCUucGUGGc -3'
miRNA:   3'- gaUGCGCCuGUCGC------UGCGUGGA--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.