Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 10811 | 0.69 | 0.482021 |
Target: 5'- -gCGAgUGCcACuggaGGCGGcaAACCCCAGCg -3' miRNA: 3'- caGCUgACGaUG----CUGCC--UUGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 25774 | 0.69 | 0.49956 |
Target: 5'- --aGGCUGCUGCG-CGGGcccgcugcguggacGCCUgGGCg -3' miRNA: 3'- cagCUGACGAUGCuGCCU--------------UGGGgUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 26536 | 0.69 | 0.51211 |
Target: 5'- cGUCGAC-GCgGCcuCGGAgggcuucGCCCCGGCa -3' miRNA: 3'- -CAGCUGaCGaUGcuGCCU-------UGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 49290 | 0.69 | 0.513162 |
Target: 5'- -gUGGCUGCUGCGucgcguCGGcgUCCCGGg -3' miRNA: 3'- caGCUGACGAUGCu-----GCCuuGGGGUCg -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 48710 | 0.69 | 0.534374 |
Target: 5'- ---aACUGCgGCGAC-GAACUCCGGCa -3' miRNA: 3'- cagcUGACGaUGCUGcCUUGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 11801 | 0.68 | 0.545097 |
Target: 5'- uGUCGGCUGCcccauCGcCGGGuGCCCCGacGCu -3' miRNA: 3'- -CAGCUGACGau---GCuGCCU-UGGGGU--CG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 21157 | 0.68 | 0.545097 |
Target: 5'- gGUgGACUGgUACGugGaGGGCUaCAGCg -3' miRNA: 3'- -CAgCUGACgAUGCugC-CUUGGgGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 31802 | 0.68 | 0.555889 |
Target: 5'- -cCGGCcGCUcGCGACGGAcacACCCgAGg -3' miRNA: 3'- caGCUGaCGA-UGCUGCCU---UGGGgUCg -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 37139 | 0.68 | 0.566741 |
Target: 5'- --gGGCacgGCgACGGCGGGcACCCUGGCg -3' miRNA: 3'- cagCUGa--CGaUGCUGCCU-UGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 9755 | 0.68 | 0.576555 |
Target: 5'- cUUGcGCUGCgccucaACGGCGGAgagacgaGCCuCCAGCg -3' miRNA: 3'- cAGC-UGACGa-----UGCUGCCU-------UGG-GGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 26097 | 0.67 | 0.599587 |
Target: 5'- gGUCGAagUGCUGgGGCuGcGCCUCGGCg -3' miRNA: 3'- -CAGCUg-ACGAUgCUGcCuUGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 23356 | 0.67 | 0.599587 |
Target: 5'- -cCGGCcGCcgaGGCGcAGCCCCAGCa -3' miRNA: 3'- caGCUGaCGaugCUGCcUUGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 32259 | 0.67 | 0.607296 |
Target: 5'- -gCGGC-GCUgaccaacucuccaaGCGcGCGGAACuCCCGGCa -3' miRNA: 3'- caGCUGaCGA--------------UGC-UGCCUUG-GGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 18663 | 0.67 | 0.621638 |
Target: 5'- -gUGAUUGCUGCGGCGc-GCUCaCGGCu -3' miRNA: 3'- caGCUGACGAUGCUGCcuUGGG-GUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 16714 | 0.67 | 0.632682 |
Target: 5'- aGUCGAgcgagcacuCUGCUcuGCGAUGGcauCCUCGGUg -3' miRNA: 3'- -CAGCU---------GACGA--UGCUGCCuu-GGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 5822 | 0.67 | 0.654759 |
Target: 5'- --gGGCUGCUGgaGGCGGAuggccuCCCguGCc -3' miRNA: 3'- cagCUGACGAUg-CUGCCUu-----GGGguCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 32821 | 0.66 | 0.665771 |
Target: 5'- -gCGGCUGUcGCGACugauuGGGGCCCgAGa -3' miRNA: 3'- caGCUGACGaUGCUG-----CCUUGGGgUCg -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 20590 | 0.66 | 0.665771 |
Target: 5'- -gCGACUGCUgcucggcaGCGccGCGGAAgUCgGGCg -3' miRNA: 3'- caGCUGACGA--------UGC--UGCCUUgGGgUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 17322 | 0.66 | 0.676751 |
Target: 5'- cGUCGuccgaUGCgacguuugACG-UGGAACCCUGGCg -3' miRNA: 3'- -CAGCug---ACGa-------UGCuGCCUUGGGGUCG- -5' |
|||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 34420 | 0.66 | 0.687689 |
Target: 5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3' miRNA: 3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home