miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 10811 0.69 0.482021
Target:  5'- -gCGAgUGCcACuggaGGCGGcaAACCCCAGCg -3'
miRNA:   3'- caGCUgACGaUG----CUGCC--UUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 25774 0.69 0.49956
Target:  5'- --aGGCUGCUGCG-CGGGcccgcugcguggacGCCUgGGCg -3'
miRNA:   3'- cagCUGACGAUGCuGCCU--------------UGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 26536 0.69 0.51211
Target:  5'- cGUCGAC-GCgGCcuCGGAgggcuucGCCCCGGCa -3'
miRNA:   3'- -CAGCUGaCGaUGcuGCCU-------UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 49290 0.69 0.513162
Target:  5'- -gUGGCUGCUGCGucgcguCGGcgUCCCGGg -3'
miRNA:   3'- caGCUGACGAUGCu-----GCCuuGGGGUCg -5'
11597 3' -55.3 NC_003085.1 + 48710 0.69 0.534374
Target:  5'- ---aACUGCgGCGAC-GAACUCCGGCa -3'
miRNA:   3'- cagcUGACGaUGCUGcCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 11801 0.68 0.545097
Target:  5'- uGUCGGCUGCcccauCGcCGGGuGCCCCGacGCu -3'
miRNA:   3'- -CAGCUGACGau---GCuGCCU-UGGGGU--CG- -5'
11597 3' -55.3 NC_003085.1 + 21157 0.68 0.545097
Target:  5'- gGUgGACUGgUACGugGaGGGCUaCAGCg -3'
miRNA:   3'- -CAgCUGACgAUGCugC-CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 31802 0.68 0.555889
Target:  5'- -cCGGCcGCUcGCGACGGAcacACCCgAGg -3'
miRNA:   3'- caGCUGaCGA-UGCUGCCU---UGGGgUCg -5'
11597 3' -55.3 NC_003085.1 + 37139 0.68 0.566741
Target:  5'- --gGGCacgGCgACGGCGGGcACCCUGGCg -3'
miRNA:   3'- cagCUGa--CGaUGCUGCCU-UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 9755 0.68 0.576555
Target:  5'- cUUGcGCUGCgccucaACGGCGGAgagacgaGCCuCCAGCg -3'
miRNA:   3'- cAGC-UGACGa-----UGCUGCCU-------UGG-GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 26097 0.67 0.599587
Target:  5'- gGUCGAagUGCUGgGGCuGcGCCUCGGCg -3'
miRNA:   3'- -CAGCUg-ACGAUgCUGcCuUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 23356 0.67 0.599587
Target:  5'- -cCGGCcGCcgaGGCGcAGCCCCAGCa -3'
miRNA:   3'- caGCUGaCGaugCUGCcUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 32259 0.67 0.607296
Target:  5'- -gCGGC-GCUgaccaacucuccaaGCGcGCGGAACuCCCGGCa -3'
miRNA:   3'- caGCUGaCGA--------------UGC-UGCCUUG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 18663 0.67 0.621638
Target:  5'- -gUGAUUGCUGCGGCGc-GCUCaCGGCu -3'
miRNA:   3'- caGCUGACGAUGCUGCcuUGGG-GUCG- -5'
11597 3' -55.3 NC_003085.1 + 16714 0.67 0.632682
Target:  5'- aGUCGAgcgagcacuCUGCUcuGCGAUGGcauCCUCGGUg -3'
miRNA:   3'- -CAGCU---------GACGA--UGCUGCCuu-GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 5822 0.67 0.654759
Target:  5'- --gGGCUGCUGgaGGCGGAuggccuCCCguGCc -3'
miRNA:   3'- cagCUGACGAUg-CUGCCUu-----GGGguCG- -5'
11597 3' -55.3 NC_003085.1 + 32821 0.66 0.665771
Target:  5'- -gCGGCUGUcGCGACugauuGGGGCCCgAGa -3'
miRNA:   3'- caGCUGACGaUGCUG-----CCUUGGGgUCg -5'
11597 3' -55.3 NC_003085.1 + 20590 0.66 0.665771
Target:  5'- -gCGACUGCUgcucggcaGCGccGCGGAAgUCgGGCg -3'
miRNA:   3'- caGCUGACGA--------UGC--UGCCUUgGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 17322 0.66 0.676751
Target:  5'- cGUCGuccgaUGCgacguuugACG-UGGAACCCUGGCg -3'
miRNA:   3'- -CAGCug---ACGa-------UGCuGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 34420 0.66 0.687689
Target:  5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3'
miRNA:   3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.