miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 38052 0.66 0.635077
Target:  5'- aGCAGcCACcgcgGCGGUGCgucaGCCGGCgguagcgCUCc -3'
miRNA:   3'- -CGUU-GUGa---UGCCGCGg---CGGCUGa------GAG- -5'
11601 5' -56.6 NC_003085.1 + 42244 0.66 0.635077
Target:  5'- gGCAGCGCU---GCGCCauccacauGCCGAagguaCUCUCg -3'
miRNA:   3'- -CGUUGUGAugcCGCGG--------CGGCU-----GAGAG- -5'
11601 5' -56.6 NC_003085.1 + 48527 0.66 0.635077
Target:  5'- -uGGCACc-CGGaCGCgGCCGACgCUCc -3'
miRNA:   3'- cgUUGUGauGCC-GCGgCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 26122 0.66 0.635077
Target:  5'- gGCGGC-CgGCGGCGCUugGCCGGC-Ca- -3'
miRNA:   3'- -CGUUGuGaUGCCGCGG--CGGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 44624 0.66 0.635076
Target:  5'- cGCcGCACUauuGCGGCGagGuuGGCUCa- -3'
miRNA:   3'- -CGuUGUGA---UGCCGCggCggCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 38566 0.66 0.635076
Target:  5'- aGCGACGCggaGGgGuuGCa-ACUCUCg -3'
miRNA:   3'- -CGUUGUGaugCCgCggCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 48062 0.66 0.633977
Target:  5'- cGCGAUgauucggGCUcCGGUGUuuuCGUCGAUUCUCa -3'
miRNA:   3'- -CGUUG-------UGAuGCCGCG---GCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 28865 0.66 0.631779
Target:  5'- cCGACuuCcGCGGCGCUGCCGAgCagcagucgcaggcgUCUCa -3'
miRNA:   3'- cGUUGu-GaUGCCGCGGCGGCU-G--------------AGAG- -5'
11601 5' -56.6 NC_003085.1 + 39154 0.66 0.624086
Target:  5'- gGCAAaggGCUACGGCGUCGUCugGACg--- -3'
miRNA:   3'- -CGUUg--UGAUGCCGCGGCGG--CUGagag -5'
11601 5' -56.6 NC_003085.1 + 2080 0.66 0.624086
Target:  5'- gGUGACGCgACGaGCgcaGCCGCCGcAC-CUCg -3'
miRNA:   3'- -CGUUGUGaUGC-CG---CGGCGGC-UGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 46076 0.66 0.624086
Target:  5'- cGCGucGCGCUuaccgACGGCgaGCCGCUGGgUCg- -3'
miRNA:   3'- -CGU--UGUGA-----UGCCG--CGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 37851 0.66 0.613102
Target:  5'- gGUAGCGCUGCcuGCGCUGgCCGGC-Ca- -3'
miRNA:   3'- -CGUUGUGAUGc-CGCGGC-GGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 5160 0.66 0.602136
Target:  5'- cGCAACACcucGCGGCGaUUGCUG-CUCg- -3'
miRNA:   3'- -CGUUGUGa--UGCCGC-GGCGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 26744 0.66 0.591195
Target:  5'- ----uGCUucuCGGCaGCCGCCgccaggGACUCUCu -3'
miRNA:   3'- cguugUGAu--GCCG-CGGCGG------CUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 13466 0.66 0.591194
Target:  5'- cGCGGuCAUcGCGGCGCgGCuCGAC-CUg -3'
miRNA:   3'- -CGUU-GUGaUGCCGCGgCG-GCUGaGAg -5'
11601 5' -56.6 NC_003085.1 + 10464 0.66 0.587919
Target:  5'- cGCGACGuagcgggcucgaauCUGCGGgGCCGucucaCCGACgauggCUCc -3'
miRNA:   3'- -CGUUGU--------------GAUGCCgCGGC-----GGCUGa----GAG- -5'
11601 5' -56.6 NC_003085.1 + 21021 0.67 0.569424
Target:  5'- uCGACGCggACGGCaGCCGCaauCUCUg -3'
miRNA:   3'- cGUUGUGa-UGCCG-CGGCGgcuGAGAg -5'
11601 5' -56.6 NC_003085.1 + 37214 0.67 0.569424
Target:  5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3'
miRNA:   3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5'
11601 5' -56.6 NC_003085.1 + 28620 0.67 0.569424
Target:  5'- aGCGGCgaGCU-CGGCGCCgGUCGcCUCa- -3'
miRNA:   3'- -CGUUG--UGAuGCCGCGG-CGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 36966 0.67 0.558611
Target:  5'- cGCGGgGCcauguUGGCGCCGCuuCGACUCc- -3'
miRNA:   3'- -CGUUgUGau---GCCGCGGCG--GCUGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.