miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 38086 0.72 0.290969
Target:  5'- gGCAGCGCaggugucCGGCGCCGCC-ACcaucgUCUCg -3'
miRNA:   3'- -CGUUGUGau-----GCCGCGGCGGcUG-----AGAG- -5'
11601 5' -56.6 NC_003085.1 + 38052 0.66 0.635077
Target:  5'- aGCAGcCACcgcgGCGGUGCgucaGCCGGCgguagcgCUCc -3'
miRNA:   3'- -CGUU-GUGa---UGCCGCGg---CGGCUGa------GAG- -5'
11601 5' -56.6 NC_003085.1 + 37897 0.67 0.537168
Target:  5'- gGCAcCACgccgACGGCGCUGCCc-UUCUUc -3'
miRNA:   3'- -CGUuGUGa---UGCCGCGGCGGcuGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 37851 0.66 0.613102
Target:  5'- gGUAGCGCUGCcuGCGCUGgCCGGC-Ca- -3'
miRNA:   3'- -CGUUGUGAUGc-CGCGGC-GGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 37681 0.71 0.329183
Target:  5'- cCGACACgcccggagcGCGGCGCCGCCGuACcgUCg -3'
miRNA:   3'- cGUUGUGa--------UGCCGCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 37214 0.67 0.569424
Target:  5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3'
miRNA:   3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5'
11601 5' -56.6 NC_003085.1 + 37050 0.69 0.4257
Target:  5'- cGgAGCGCaGCGGCcCCGCCGGgUCg- -3'
miRNA:   3'- -CgUUGUGaUGCCGcGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 36997 0.72 0.305824
Target:  5'- aGCAggGCACUGCuGGCGCCccagcGCUGACcUUCa -3'
miRNA:   3'- -CGU--UGUGAUG-CCGCGG-----CGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 36966 0.67 0.558611
Target:  5'- cGCGGgGCcauguUGGCGCCGCuuCGACUCc- -3'
miRNA:   3'- -CGUUgUGau---GCCGCGGCG--GCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 35183 0.7 0.397735
Target:  5'- cGCGGCGCUugACGGCagcaGCCugGCCGcACgUCUCg -3'
miRNA:   3'- -CGUUGUGA--UGCCG----CGG--CGGC-UG-AGAG- -5'
11601 5' -56.6 NC_003085.1 + 34787 0.71 0.353833
Target:  5'- cCAGCGCcACGGCGCCuccaaguccuuGCCGcgcuGCUUUCg -3'
miRNA:   3'- cGUUGUGaUGCCGCGG-----------CGGC----UGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 34272 0.69 0.435279
Target:  5'- cGCGGCGCU--GGCGCa-CCGGCUCa- -3'
miRNA:   3'- -CGUUGUGAugCCGCGgcGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 33112 0.72 0.298325
Target:  5'- gGUGGCGCUGuCGaacgcucccuaGCGCCGCaGGCUCUCg -3'
miRNA:   3'- -CGUUGUGAU-GC-----------CGCGGCGgCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 32246 0.69 0.454803
Target:  5'- cGCGugcuCACcaGCGGCGCUGaCCaACUCUCc -3'
miRNA:   3'- -CGUu---GUGa-UGCCGCGGC-GGcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 31478 0.69 0.435279
Target:  5'- cGCAGCuccgugccCUGCGGCccgcGCUGCCGGCgCUUc -3'
miRNA:   3'- -CGUUGu-------GAUGCCG----CGGCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 31449 0.72 0.283757
Target:  5'- aGCgAGC-CUugGGCGCCaGuCCGcGCUCUCg -3'
miRNA:   3'- -CG-UUGuGAugCCGCGG-C-GGC-UGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 28865 0.66 0.631779
Target:  5'- cCGACuuCcGCGGCGCUGCCGAgCagcagucgcaggcgUCUCa -3'
miRNA:   3'- cGUUGu-GaUGCCGCGGCGGCU-G--------------AGAG- -5'
11601 5' -56.6 NC_003085.1 + 28802 0.73 0.262968
Target:  5'- uGCGGCGCgAgGaGUGCCGCUGGCUCa- -3'
miRNA:   3'- -CGUUGUGaUgC-CGCGGCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 28620 0.67 0.569424
Target:  5'- aGCGGCgaGCU-CGGCGCCgGUCGcCUCa- -3'
miRNA:   3'- -CGUUG--UGAuGCCGCGG-CGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 27342 0.71 0.345473
Target:  5'- cCGGCuGCUGCGGCGCCG--GGCUCUg -3'
miRNA:   3'- cGUUG-UGAUGCCGCGGCggCUGAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.