miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 28805 0.66 0.632307
Target:  5'- gGCGCGAGGagugccgcUGGcucaaggaguaggccAUGGGGAagcaagcaCCcGCGCCg -3'
miRNA:   3'- -CGCGUUCC--------ACC---------------UACUCCU--------GGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 25175 0.66 0.627917
Target:  5'- -gGCcuGGUGGcgGuGGcGAUgAGCGCCa -3'
miRNA:   3'- cgCGuuCCACCuaC-UC-CUGgUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 44443 0.66 0.624624
Target:  5'- uGCGaauGGUGGAUgugcugacacuugcGAGGGCUGcCGCCu -3'
miRNA:   3'- -CGCguuCCACCUA--------------CUCCUGGUcGCGG- -5'
11604 3' -56.7 NC_003085.1 + 5540 0.66 0.616945
Target:  5'- uGCGCGAaGUGcGcgcaaAGGGCCuGGCGCCg -3'
miRNA:   3'- -CGCGUUcCAC-Cuac--UCCUGG-UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 28587 0.66 0.616945
Target:  5'- gGCGCAcauggcGGUGGAcacgccgGuGGugUGGCGCUc -3'
miRNA:   3'- -CGCGUu-----CCACCUa------CuCCugGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 26475 0.66 0.610368
Target:  5'- cGCGCAccucuggcugcuuggGGGUGGcagacuGGGCCGGCucguccggcuucGCCg -3'
miRNA:   3'- -CGCGU---------------UCCACCuacu--CCUGGUCG------------CGG- -5'
11604 3' -56.7 NC_003085.1 + 22870 0.66 0.605987
Target:  5'- aGCGCccacAGGUGGuaccGAGGAgCCuGGUGCg -3'
miRNA:   3'- -CGCGu---UCCACCua--CUCCU-GG-UCGCGg -5'
11604 3' -56.7 NC_003085.1 + 38682 0.66 0.595051
Target:  5'- uGCGCGgaagAGGUGGcAUGccc-CCAGCGUCu -3'
miRNA:   3'- -CGCGU----UCCACC-UACuccuGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 38780 0.66 0.584147
Target:  5'- cGCGCAGGGcUGG-UGuGu-CCAGCacGCCg -3'
miRNA:   3'- -CGCGUUCC-ACCuACuCcuGGUCG--CGG- -5'
11604 3' -56.7 NC_003085.1 + 32282 0.66 0.58197
Target:  5'- cGCGCGgaacucccggcagAGGUGGuucagGAGGcACUugacacaGGUGCCa -3'
miRNA:   3'- -CGCGU-------------UCCACCua---CUCC-UGG-------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 10151 0.67 0.573282
Target:  5'- uGCGCGGcGG-GGAguaccgcGAGGACCGG-GCg -3'
miRNA:   3'- -CGCGUU-CCaCCUa------CUCCUGGUCgCGg -5'
11604 3' -56.7 NC_003085.1 + 42443 0.67 0.573282
Target:  5'- cGCGCGAGGgccuUGAGGgcGCCGGUGa- -3'
miRNA:   3'- -CGCGUUCCaccuACUCC--UGGUCGCgg -5'
11604 3' -56.7 NC_003085.1 + 4652 0.67 0.562465
Target:  5'- cGCGCccccGGUGGcaGAGGcgaGCCuuucacGGCGCCg -3'
miRNA:   3'- -CGCGuu--CCACCuaCUCC---UGG------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 15379 0.67 0.562465
Target:  5'- aCGCGgaugcAGGaGcGUGAGGACgAGCGUCa -3'
miRNA:   3'- cGCGU-----UCCaCcUACUCCUGgUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 12681 0.67 0.562465
Target:  5'- uGCGCcugccuccGGGUGGAUGAc-GCCA-CGCCg -3'
miRNA:   3'- -CGCGu-------UCCACCUACUccUGGUcGCGG- -5'
11604 3' -56.7 NC_003085.1 + 11660 0.67 0.551704
Target:  5'- uGCGCcGGGUGGccGAGGAgguGGgGCUg -3'
miRNA:   3'- -CGCGuUCCACCuaCUCCUgg-UCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 592 0.67 0.551704
Target:  5'- nCGCAGGGUGucuc--GACUGGCGCCg -3'
miRNA:   3'- cGCGUUCCACcuacucCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 24230 0.67 0.551704
Target:  5'- aGCGCAccAGGgcggcgccgGuGAUGAGGuACCAGcCGUa -3'
miRNA:   3'- -CGCGU--UCCa--------C-CUACUCC-UGGUC-GCGg -5'
11604 3' -56.7 NC_003085.1 + 17989 0.67 0.541006
Target:  5'- cCGCAGGGcacGGAgcugcGAgagcgcGGACUGGCGCCc -3'
miRNA:   3'- cGCGUUCCa--CCUa----CU------CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 23445 0.67 0.541006
Target:  5'- gGCGCAgcAGGgacgcauGAcgGAGGcCCAGCGCa -3'
miRNA:   3'- -CGCGU--UCCac-----CUa-CUCCuGGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.