Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 3' | -58.7 | NC_003085.1 | + | 16776 | 0.66 | 0.527111 |
Target: 5'- uGCCUuuccgCACCuuGu-UGAGggGCGUCUc -3' miRNA: 3'- gCGGA-----GUGGggCcuGCUCuuCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 39774 | 0.66 | 0.546805 |
Target: 5'- cCGCaUCACCCU-GACGcuugaguaccuccAGAAGuCGUCCa -3' miRNA: 3'- -GCGgAGUGGGGcCUGC-------------UCUUC-GCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 22414 | 0.66 | 0.547849 |
Target: 5'- aGUCcaucgaggUgACCCCGGAcuaccaguccguCGAGGAGCG-CCa -3' miRNA: 3'- gCGG--------AgUGGGGCCU------------GCUCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 17042 | 0.66 | 0.558314 |
Target: 5'- aCGCCa-ACCuCCGGAgcuuCGAG-GGCGUCg -3' miRNA: 3'- -GCGGagUGG-GGCCU----GCUCuUCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42542 | 0.66 | 0.558314 |
Target: 5'- cCGCUUCGCCUcggccagcgcgCGGGCGAGGGcugacGCGauggCCu -3' miRNA: 3'- -GCGGAGUGGG-----------GCCUGCUCUU-----CGCa---GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 31461 | 0.66 | 0.547849 |
Target: 5'- gGCCUCGCgCCguCGGACaGGAGGCagugaGUCa -3' miRNA: 3'- gCGGAGUG-GG--GCCUGcUCUUCG-----CAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 22889 | 0.66 | 0.558314 |
Target: 5'- cCGCCggACUCCGGuGCGuc-GGCGUUCg -3' miRNA: 3'- -GCGGagUGGGGCC-UGCucuUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 21293 | 0.66 | 0.547849 |
Target: 5'- gCGCCUgCACUUCGuAUGAG-GGCGUCg -3' miRNA: 3'- -GCGGA-GUGGGGCcUGCUCuUCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 5813 | 0.66 | 0.547849 |
Target: 5'- cCGCC---CCCCGGGCugcuGGAGGCGgauggCCu -3' miRNA: 3'- -GCGGaguGGGGCCUGc---UCUUCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 20318 | 0.66 | 0.537445 |
Target: 5'- cCGCCaccuUCACCCUGGAUGAacucuGGgccacGGCG-CCu -3' miRNA: 3'- -GCGG----AGUGGGGCCUGCU-----CU-----UCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 11784 | 0.66 | 0.537445 |
Target: 5'- gCGCCgCGCUCCGGGCGuGucGGCuGcCCc -3' miRNA: 3'- -GCGGaGUGGGGCCUGCuCu-UCG-CaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 5714 | 0.66 | 0.506674 |
Target: 5'- gCGCC-CACCaCCgGGGCG-GAcccggcucgGGUGUCCc -3' miRNA: 3'- -GCGGaGUGG-GG-CCUGCuCU---------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 670 | 0.66 | 0.527111 |
Target: 5'- uGCCgugaGCCCCGcGA--AGAAGCG-CCg -3' miRNA: 3'- gCGGag--UGGGGC-CUgcUCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 33163 | 0.66 | 0.516852 |
Target: 5'- gCGCCUCuguUCCCGacagaaGAgGAGGAGCGgagauugcgCCa -3' miRNA: 3'- -GCGGAGu--GGGGC------CUgCUCUUCGCa--------GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 6620 | 0.66 | 0.536409 |
Target: 5'- gGuCCUCaaguccgGCgCCGGACGuGAgcgcaaggugcuGGCGUCCc -3' miRNA: 3'- gC-GGAG-------UGgGGCCUGCuCU------------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 44813 | 0.66 | 0.506674 |
Target: 5'- uCGCCUCugCCaccggGGGCGcGAGG-GUCg -3' miRNA: 3'- -GCGGAGugGGg----CCUGCuCUUCgCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 19079 | 0.66 | 0.516852 |
Target: 5'- gCGCCg-GgCCCGGACG-GAGuGCG-CCg -3' miRNA: 3'- -GCGGagUgGGGCCUGCuCUU-CGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 405 | 0.67 | 0.47668 |
Target: 5'- gCGCCUgCGcuCCCUGGACGccagucucGGccGCGUCUa -3' miRNA: 3'- -GCGGA-GU--GGGGCCUGC--------UCuuCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41160 | 0.67 | 0.47668 |
Target: 5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3' miRNA: 3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43747 | 0.67 | 0.45718 |
Target: 5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3' miRNA: 3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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